Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   DA378_RS04220 Genome accession   NZ_CP028440
Coordinates   1000907..1001503 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain J7-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 995907..1006503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS04195 mobB 996283..996804 (-) 522 WP_003154581.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  DA378_RS04200 glp 996765..998057 (-) 1293 WP_003154583.1 gephyrin-like molybdotransferase Glp -
  DA378_RS04205 - 998075..999094 (-) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  DA378_RS04210 - 999146..999748 (-) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  DA378_RS04215 - 999894..1000886 (+) 993 WP_003154589.1 hypothetical protein -
  DA378_RS04220 rok 1000907..1001503 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  DA378_RS04225 - 1001955..1002413 (-) 459 WP_003154593.1 TlpA disulfide reductase family protein -
  DA378_RS04230 - 1002701..1003507 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  DA378_RS04235 - 1003541..1003786 (-) 246 WP_003154596.1 YkuS family protein -
  DA378_RS04240 - 1003847..1004974 (-) 1128 WP_003154597.1 N-acetyldiaminopimelate deacetylase -
  DA378_RS04245 dapD 1005045..1005755 (-) 711 WP_003154598.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DA378_RS04250 - 1005837..1006292 (-) 456 WP_003154599.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=284977 DA378_RS04220 WP_003154591.1 1000907..1001503(-) (rok) [Bacillus velezensis strain J7-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=284977 DA378_RS04220 WP_003154591.1 1000907..1001503(-) (rok) [Bacillus velezensis strain J7-1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment