Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DA378_RS04105 Genome accession   NZ_CP028440
Coordinates   980725..981009 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain J7-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 975725..986009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS04085 ade 975831..977564 (-) 1734 WP_003154552.1 adenine deaminase -
  DA378_RS04090 ktrC 977713..978378 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  DA378_RS04095 - 978419..979246 (-) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  DA378_RS04100 - 979248..980552 (-) 1305 WP_003154556.1 ATP-binding protein -
  DA378_RS04105 abrB 980725..981009 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DA378_RS04115 mreBH 981278..982285 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  DA378_RS04120 - 982357..982491 (+) 135 WP_003154559.1 protein YkpC -
  DA378_RS04125 - 982592..983824 (+) 1233 WP_003154560.1 aminopeptidase -
  DA378_RS04130 - 983854..984762 (-) 909 WP_003154561.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=284976 DA378_RS04105 WP_003154557.1 980725..981009(-) (abrB) [Bacillus velezensis strain J7-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=284976 DA378_RS04105 WP_003154557.1 980725..981009(-) (abrB) [Bacillus velezensis strain J7-1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment