Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DA378_RS00985 Genome accession   NZ_CP028440
Coordinates   228916..229524 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain J7-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 223916..234524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA378_RS00965 dnaD 224152..224850 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  DA378_RS00970 nth 224869..225528 (+) 660 WP_003153517.1 endonuclease III -
  DA378_RS00975 - 225525..226016 (+) 492 WP_003153518.1 YpoC family protein -
  DA378_RS00980 - 226094..228877 (-) 2784 WP_003153519.1 PBP1A family penicillin-binding protein -
  DA378_RS00985 recU 228916..229524 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  DA378_RS00990 - 229566..230528 (+) 963 WP_014305287.1 DUF2515 domain-containing protein -
  DA378_RS00995 sspM 230572..230676 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  DA378_RS01000 - 230882..231127 (+) 246 WP_003153527.1 DUF5446 family protein -
  DA378_RS01005 - 231173..231541 (+) 369 WP_003153529.1 YppE family protein -
  DA378_RS01010 - 231580..231762 (-) 183 WP_003153532.1 YppF family protein -
  DA378_RS01015 - 231949..232383 (+) 435 WP_003153534.1 YppG family protein -
  DA378_RS01020 - 232413..232826 (-) 414 WP_003153535.1 hypothetical protein -
  DA378_RS01025 - 232965..233471 (+) 507 WP_003153536.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=284970 DA378_RS00985 WP_003153521.1 228916..229524(-) (recU) [Bacillus velezensis strain J7-1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=284970 DA378_RS00985 WP_003153521.1 228916..229524(-) (recU) [Bacillus velezensis strain J7-1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment