Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DA377_RS13290 Genome accession   NZ_CP028439
Coordinates   2705620..2706084 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain 8-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2700620..2711084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA377_RS13265 - 2701133..2701678 (-) 546 Protein_2548 hypothetical protein -
  DA377_RS13270 fadH 2701789..2702553 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  DA377_RS13275 - 2702697..2703560 (+) 864 WP_003154619.1 metallophosphoesterase -
  DA377_RS13280 - 2703635..2704129 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  DA377_RS13285 - 2704205..2705497 (+) 1293 WP_003154621.1 MFS transporter -
  DA377_RS13290 kre 2705620..2706084 (+) 465 WP_003154622.1 YkyB family protein Regulator
  DA377_RS13295 cheV 2706127..2707038 (-) 912 WP_003154623.1 chemotaxis protein CheV -
  DA377_RS19620 - 2707227..2707388 (+) 162 WP_003154625.1 hypothetical protein -
  DA377_RS13305 - 2707589..2708758 (+) 1170 WP_003154626.1 aminotransferase A -
  DA377_RS13310 - 2708784..2710604 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=284945 DA377_RS13290 WP_003154622.1 2705620..2706084(+) (kre) [Bacillus velezensis strain 8-2]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=284945 DA377_RS13290 WP_003154622.1 2705620..2706084(+) (kre) [Bacillus velezensis strain 8-2]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment