Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   EGX82_RS08145 Genome accession   NZ_CP033822
Coordinates   1543740..1546568 (+) Length   942 a.a.
NCBI ID   WP_001152948.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_512     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1538740..1551568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX82_RS08120 (EGX82_08120) rpsF 1540724..1541011 (+) 288 WP_001151773.1 30S ribosomal protein S6 -
  EGX82_RS08125 (EGX82_08125) ssbA 1541023..1541514 (+) 492 WP_000609585.1 single-stranded DNA-binding protein Machinery gene
  EGX82_RS08130 (EGX82_08130) rpsR 1541559..1541798 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  EGX82_RS08135 (EGX82_08135) - 1541968..1542912 (+) 945 WP_000812121.1 magnesium transporter CorA family protein -
  EGX82_RS08140 (EGX82_08140) - 1542937..1543608 (+) 672 WP_000174846.1 DUF1129 family protein -
  EGX82_RS08145 (EGX82_08145) uvrA 1543740..1546568 (+) 2829 WP_001152948.1 excinuclease ABC subunit UvrA Machinery gene
  EGX82_RS08155 (EGX82_08155) - 1546904..1548403 (+) 1500 WP_000208365.1 MDR family MFS transporter -
  EGX82_RS08160 (EGX82_08160) - 1548405..1549121 (+) 717 WP_000584723.1 DUF4811 domain-containing protein -
  EGX82_RS08165 (EGX82_08165) - 1549221..1550288 (+) 1068 WP_000505339.1 Xaa-Pro peptidase family protein -
  EGX82_RS08170 (EGX82_08170) - 1550300..1550752 (+) 453 WP_001081097.1 deaminase -
  EGX82_RS08175 (EGX82_08175) - 1550800..1551174 (+) 375 WP_000555076.1 metal-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104127.43 Da        Isoelectric Point: 6.4024

>NTDB_id=284943 EGX82_RS08145 WP_001152948.1 1543740..1546568(+) (uvrA) [Streptococcus agalactiae strain FDAARGOS_512]
MQDKLMIRGARAHNLKNISVDIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVDKVLALPERTKMQILAPIIRRKK
GQHKSTFEKIQKDGYVRVRIDGDIHDVTEVPELSKSKMHNIDIVVDRLINKEGIRSRLFDSVEAALRLSDGYVVIDTMDG
NELLFSEHYSCPECGFTVPELEPRLFSFNAPFGSCTTCDGLGIKLEVDIDLVIPDKSKTLREGALVPWNPISSNYYPTML
EQAMTQFGVDMDTPFEKLSKAEQDLALYGSGEREFHFHYINDFGGERNIDLPFEGVVNNINRRYHETNSDYTRNVMREYM
NELKCNTCHGYRLNDQALCVRVGGEEGLNIGQVSDLSIADHLELLETLRLSSNEQLIARPIIKEIHDRLSFLNNVGLNYL
NLSRSAGTLSGGESQRIRLATQIGSNLSGVLYVLDEPSIGLHQRDNDRLIDSLKKMRDLGNTLIVVEHDEDTMMAADWLI
DVGPGAGAFGGEIVASGTPKQVAKNTKSITGQYLSGKKVIPVPSERRVGNGRFLEIKGAAENNLQNLDVKFPLGKFIAVT
GVSGSGKSTLINSILKKAVAQKLNRNSDKPGKYVSLEGIEYVDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCESCSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKEKNIAQILDMTVNDAVTFF
AAIPKIARKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHADDIARLLKVLDRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGIGGGQIVAIGTPEEVAENPKSYTGYYLKEKLAR

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=284943 EGX82_RS08145 WP_001152948.1 1543740..1546568(+) (uvrA) [Streptococcus agalactiae strain FDAARGOS_512]
ATGCAAGATAAATTAATGATAAGAGGAGCAAGAGCTCACAATTTAAAAAATATAAGTGTCGACATCCCACGAGACAAGTT
AGTTGTCGTTACGGGACTATCAGGATCAGGTAAGTCTAGTTTGGCCTTTGACACTATCTATGCAGAAGGACAACGTCGTT
ACGTTGAAAGTCTTTCTGCTTACGCGCGCCAATTTTTGGGAAATATGGAAAAGCCTGATGTAGATTCTATTGATGGCCTT
AGTCCAGCTATTTCTATTGATCAGAAAACAACAAGTAAGAATCCTCGCTCTACTGTTGGGACTGTAACAGAAATTAACGA
TTATTTACGTTTGCTTTATGCTCGTGTTGGAACCCCATATTGTATCAATGGTCACGGAGCCATCACAGCATCTTCTGTAG
AGCAAATTGTGGATAAGGTACTAGCGCTTCCAGAGCGAACAAAGATGCAAATTTTAGCCCCAATTATACGTCGAAAAAAA
GGACAACACAAATCAACATTTGAGAAAATACAAAAAGATGGTTACGTTCGTGTTCGTATTGATGGTGATATTCACGATGT
TACTGAGGTGCCTGAATTATCAAAAAGTAAGATGCACAATATTGATATTGTAGTAGATCGATTAATTAATAAAGAGGGCA
TTCGTTCCCGCTTATTTGATTCCGTTGAAGCGGCTCTACGTTTGTCGGATGGTTATGTCGTTATTGATACAATGGATGGC
AATGAGTTATTGTTTTCAGAGCATTATTCTTGTCCTGAATGTGGTTTTACTGTTCCTGAATTAGAGCCACGCCTTTTTTC
TTTTAATGCTCCCTTTGGTTCTTGTACGACCTGTGATGGCTTAGGAATTAAGTTAGAAGTGGATATAGATTTGGTTATTC
CAGATAAAAGCAAGACCCTTAGAGAAGGGGCCTTAGTTCCTTGGAATCCAATTTCATCAAATTATTATCCAACGATGCTA
GAGCAAGCTATGACTCAATTTGGTGTTGATATGGATACGCCATTTGAAAAATTAAGCAAGGCGGAGCAGGACCTAGCCCT
ATATGGTTCAGGCGAACGAGAGTTCCATTTCCATTATATTAACGATTTTGGAGGCGAGAGAAATATTGATTTGCCTTTTG
AAGGGGTTGTCAATAATATTAATCGTCGTTACCATGAAACTAATAGCGATTACACACGCAATGTTATGCGAGAATATATG
AACGAGCTAAAATGTAACACTTGTCATGGCTATCGTCTCAATGATCAAGCACTTTGCGTAAGAGTTGGGGGAGAAGAAGG
TCTTAATATTGGGCAAGTCTCAGATTTATCGATAGCAGACCATTTAGAACTTTTAGAAACGTTGCGTTTATCTTCAAATG
AACAATTAATTGCTCGACCAATTATCAAAGAAATTCATGACCGCCTAAGTTTCTTAAATAATGTTGGGCTTAATTATTTA
AATCTGTCACGTTCTGCAGGAACGCTTTCCGGGGGCGAGAGTCAACGTATTCGTTTGGCTACTCAAATTGGGTCTAATTT
ATCAGGTGTCCTTTATGTACTTGATGAACCGTCCATTGGACTTCATCAGCGAGACAATGACCGTTTGATTGATAGTCTTA
AGAAAATGCGTGATTTGGGTAATACGCTTATTGTTGTTGAACATGATGAAGATACAATGATGGCAGCTGATTGGTTAATC
GATGTGGGACCTGGCGCTGGTGCGTTTGGTGGTGAGATTGTGGCCTCTGGCACACCGAAGCAAGTAGCTAAAAATACTAA
ATCTATTACAGGACAATATTTGTCAGGTAAGAAAGTGATTCCTGTGCCATCTGAACGAAGAGTAGGCAATGGTCGCTTTT
TAGAAATCAAAGGTGCGGCAGAAAACAACCTACAAAATTTAGATGTCAAGTTCCCTCTCGGTAAATTTATTGCCGTAACT
GGTGTCTCAGGTTCTGGAAAATCAACCTTAATTAATAGTATTTTGAAAAAAGCTGTTGCGCAGAAGCTTAACCGTAACTC
AGATAAACCAGGTAAATATGTTTCTTTAGAAGGCATTGAATATGTTGATCGATTGATTGATATTGACCAAAGTCCAATTG
GTCGGACCCCACGTTCTAATCCCGCAACCTATACAGGTGTTTTTGATGATATTCGTGATCTTTTTGCTCAAACTAATGAG
GCAAAAATTCGAGGTTATAAAAAAGGACGCTTCTCATTTAACGTCAAAGGTGGACGTTGTGAGTCTTGTTCTGGTGATGG
TATCATCAAAATTGAGATGCATTTTTTACCAGATGTCTACGTTCCTTGTGAAGTATGCCACGGCACGCGCTATAATAGTG
AGACTCTGGAAGTACATTACAAAGAAAAAAATATTGCACAAATTCTTGATATGACAGTGAATGATGCAGTTACATTTTTT
GCAGCTATTCCTAAAATTGCTCGTAAGTTACAGACTATTAAGGATGTTGGTTTGGGATATGTCACTTTGGGGCAACCAGC
TACAACCTTATCAGGAGGAGAAGCTCAGCGAATGAAGTTGGCAAGTGAATTACATAAGCGTTCGACAGGTAAGAGTCTTT
ACATATTAGACGAACCAACAACGGGGCTTCATGCAGATGATATTGCTCGCTTACTTAAGGTTTTGGATCGTTTTGTAGAT
GATGGTAATACAGTGCTTGTTATTGAGCATAACCTTGATGTTATTAAAACTGCTGACCACATTATTGATCTCGGCCCTGA
AGGAGGTATTGGTGGCGGACAAATTGTAGCTATCGGAACACCAGAAGAAGTTGCTGAAAATCCTAAATCCTATACAGGAT
ATTATTTAAAAGAGAAGTTAGCAAGATAG

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85.426

99.788

0.852
  uvrA Streptococcus pneumoniae TIGR4

85.426

99.788

0.852
  uvrA Streptococcus pneumoniae D39

85.426

99.788

0.852

Multiple sequence alignment