Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DA377_RS00810 Genome accession   NZ_CP028439
Coordinates   137339..137629 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain 8-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 132339..142629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA377_RS00795 - 132562..133887 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  DA377_RS00800 - 134022..134789 (-) 768 WP_004264700.1 TatD family hydrolase -
  DA377_RS00805 metG 134865..136856 (-) 1992 WP_004264704.1 methionine--tRNA ligase -
  DA377_RS00810 abrB 137339..137629 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  DA377_RS00815 rsmI 137679..138560 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DA377_RS00820 - 138535..138834 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  DA377_RS00825 - 138821..139564 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DA377_RS00830 yabA 139625..139984 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  DA377_RS00835 ricT 139999..140826 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  DA377_RS00840 holB 140829..141818 (-) 990 WP_004264727.1 DNA polymerase III subunit delta' -
  DA377_RS00845 - 141830..142270 (-) 441 WP_004264730.1 DUF327 family protein -
  DA377_RS00850 darA 142283..142612 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=284895 DA377_RS00810 WP_169510469.1 137339..137629(+) (abrB) [Bacillus velezensis strain 8-2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=284895 DA377_RS00810 WP_169510469.1 137339..137629(+) (abrB) [Bacillus velezensis strain 8-2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment