Detailed information    

insolico Bioinformatically predicted

Overview


Name   comFC/cflB   Type   Machinery gene
Locus tag   EGX82_RS04045 Genome accession   NZ_CP033822
Coordinates   778490..779155 (-) Length   221 a.a.
NCBI ID   WP_000128301.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_512     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 773490..784155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX82_RS04040 (EGX82_04040) raiA 777859..778413 (-) 555 WP_000599096.1 ribosome-associated translation inhibitor RaiA -
  EGX82_RS04045 (EGX82_04045) comFC/cflB 778490..779155 (-) 666 WP_000128301.1 ComF family protein Machinery gene
  EGX82_RS04050 (EGX82_04050) comFA/cflA 779155..780444 (-) 1290 WP_000432954.1 DEAD/DEAH box helicase Machinery gene
  EGX82_RS04055 (EGX82_04055) - 780500..781144 (+) 645 WP_001108144.1 YigZ family protein -
  EGX82_RS04060 (EGX82_04060) cysK 781235..782161 (+) 927 WP_000036944.1 cysteine synthase A -
  EGX82_RS04065 (EGX82_04065) - 782313..783401 (-) 1089 WP_000862123.1 glycerol dehydrogenase -
  EGX82_RS04070 (EGX82_04070) - 783469..784137 (-) 669 WP_000394891.1 fructose-6-phosphate aldolase -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25686.96 Da        Isoelectric Point: 9.5678

>NTDB_id=284895 EGX82_RS04045 WP_000128301.1 778490..779155(-) (comFC/cflB) [Streptococcus agalactiae strain FDAARGOS_512]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKRYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDRGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=284895 EGX82_RS04045 WP_000128301.1 778490..779155(-) (comFC/cflB) [Streptococcus agalactiae strain FDAARGOS_512]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAGGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTATAAAAATATTCTTTCTAAAAAAGATAGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.534

100

0.425

  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421

  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421

  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421

  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412

  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412


Multiple sequence alignment