Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EGX82_RS03830 Genome accession   NZ_CP033822
Coordinates   742277..743311 (-) Length   344 a.a.
NCBI ID   WP_000732715.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_512     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 737277..748311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX82_RS03795 (EGX82_03795) - 738029..738331 (-) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  EGX82_RS03800 (EGX82_03800) - 738324..738620 (-) 297 WP_001140526.1 YlxR family protein -
  EGX82_RS03805 (EGX82_03805) nusA 738642..739793 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  EGX82_RS03810 (EGX82_03810) rimP 739829..740305 (-) 477 WP_041971671.1 ribosome maturation factor RimP -
  EGX82_RS03820 (EGX82_03820) trmB 740794..741429 (-) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EGX82_RS03825 (EGX82_03825) ccrZ 741419..742219 (-) 801 WP_000155919.1 cell cycle regulator CcrZ -
  EGX82_RS03830 (EGX82_03830) pptB 742277..743311 (-) 1035 WP_000732715.1 ABC transporter permease Regulator
  EGX82_RS03835 (EGX82_03835) pptA 743313..744038 (-) 726 WP_000912314.1 ABC transporter ATP-binding protein Regulator
  EGX82_RS03840 (EGX82_03840) - 744110..744296 (+) 187 Protein_728 hypothetical protein -
  EGX82_RS03845 (EGX82_03845) - 744348..744851 (-) 504 WP_000773458.1 hypothetical protein -
  EGX82_RS03850 (EGX82_03850) - 745187..745606 (+) 420 WP_000368099.1 HIT family protein -
  EGX82_RS03855 (EGX82_03855) - 745603..745899 (+) 297 WP_000690175.1 hypothetical protein -
  EGX82_RS03860 (EGX82_03860) - 745963..747270 (-) 1308 WP_000708161.1 LCP family protein -
  EGX82_RS03865 (EGX82_03865) - 747279..747800 (-) 522 WP_000043149.1 GNAT family N-acetyltransferase -
  EGX82_RS03870 (EGX82_03870) tsaE 747793..748236 (-) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40275.64 Da        Isoelectric Point: 10.4229

>NTDB_id=284893 EGX82_RS03830 WP_000732715.1 742277..743311(-) (pptB) [Streptococcus agalactiae strain FDAARGOS_512]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDVILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDIILIRELEPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=284893 EGX82_RS03830 WP_000732715.1 742277..743311(-) (pptB) [Streptococcus agalactiae strain FDAARGOS_512]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAATTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGTTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ATTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATATCATACTTATAAGAGAATTGGAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.965

100

0.48

  pptB Streptococcus salivarius strain HSISS4

47.674

100

0.477


Multiple sequence alignment