Detailed information NTG0284890

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: DA376_RS17945
• Genome accession: NZ_CP028437
• Coordinates: 3599812..3600957 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain DR-08
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3594812..3605957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DA376_RS17920 (DA376_17920)	-	3595709..3596137 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
DA376_RS17925 (DA376_17925)	-	3596291..3596803 (+)	513	Protein_3448	bacteriocin biosynthesis protein AlbG	-
DA376_RS17930 (DA376_17930)	-	3596810..3598186 (-)	1377	WP_032875890.1	YncE family protein	-
DA376_RS17935 (DA376_17935)	-	3598226..3599581 (-)	1356	WP_032875887.1	YncE family protein	-
DA376_RS17945 (DA376_17945)	rapF	3599812..3600957 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
DA376_RS17950 (DA376_17950)	-	3600941..3601060 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
DA376_RS17955 (DA376_17955)	speB	3601183..3602055 (-)	873	WP_032875884.1	agmatinase	-
DA376_RS17960 (DA376_17960)	speE	3602114..3602944 (-)	831	WP_003151052.1	spermidine synthase	-
DA376_RS17965 (DA376_17965)	-	3603144..3605216 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
DA376_RS17970 (DA376_17970)	-	3605241..3605674 (-)	434	Protein_3456	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=284890 DA376_RS17945 WP_074534220.1 3599812..3600957(+) (rapF) [Bacillus velezensis strain DR-08]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=284890 DA376_RS17945 WP_074534220.1 3599812..3600957(+) (rapF) [Bacillus velezensis strain DR-08]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541