Detailed information NTG0284753

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGY18_RS29870
• Genome accession: NZ_CP033771
• Coordinates: 6299845..6300849 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain FDAARGOS_532
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6294845..6305849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGY18_RS29840 (EGY18_29745)	fghA	6294937..6295788 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
EGY18_RS29845 (EGY18_29750)	ispF	6295859..6296332 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGY18_RS29850 (EGY18_29755)	truD	6296329..6297396 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
EGY18_RS29855 (EGY18_29760)	surE	6297384..6298133 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EGY18_RS29860 (EGY18_29765)	-	6298166..6298801 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EGY18_RS29865 (EGY18_29770)	-	6298847..6299740 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
EGY18_RS29870 (EGY18_29775)	rpoS	6299845..6300849 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EGY18_RS29875 (EGY18_29780)	fdxA	6301276..6301599 (-)	324	WP_003119354.1	ferredoxin FdxA	-
EGY18_RS29880 (EGY18_29785)	mutS	6301666..6304233 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
EGY18_RS29890 (EGY18_29795)	-	6304359..6305366 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=284753 EGY18_RS29870 WP_003113871.1 6299845..6300849(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_532]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=284753 EGY18_RS29870 WP_003113871.1 6299845..6300849(+) (rpoS) [Pseudomonas aeruginosa strain FDAARGOS_532]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653