Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EGY18_RS16500 Genome accession   NZ_CP033771
Coordinates   3440778..3441203 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain FDAARGOS_532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435778..3446203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY18_RS16485 (EGY18_16425) pilX 3436342..3436929 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  EGY18_RS16490 (EGY18_16430) pilY1 3436941..3440432 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  EGY18_RS16495 (EGY18_16435) pilY2 3440434..3440781 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  EGY18_RS16500 (EGY18_16440) comF 3440778..3441203 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  EGY18_RS16505 (EGY18_16445) ispH 3441250..3442194 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EGY18_RS16510 (EGY18_16450) fkpB 3442280..3442720 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  EGY18_RS16515 (EGY18_16455) lspA 3442713..3443222 (-) 510 WP_003094728.1 signal peptidase II -
  EGY18_RS16520 (EGY18_16460) ileS 3443215..3446046 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=284704 EGY18_RS16500 WP_003094721.1 3440778..3441203(+) (comF) [Pseudomonas aeruginosa strain FDAARGOS_532]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=284704 EGY18_RS16500 WP_003094721.1 3440778..3441203(+) (comF) [Pseudomonas aeruginosa strain FDAARGOS_532]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment