Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   APP7_RS00395 Genome accession   NC_010939
Coordinates   85426..86031 (-) Length   201 a.a.
NCBI ID   WP_026042312.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 7 str. AP76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80426..91031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APP7_RS00365 (APP7_0068) - 81175..82164 (+) 990 WP_005603245.1 peptide ABC transporter ATP-binding protein -
  APP7_RS00370 (APP7_0069) psiE 82237..82647 (-) 411 WP_005595704.1 phosphate-starvation-inducible protein PsiE -
  APP7_RS00375 (APP7_0070) - 82725..83357 (-) 633 WP_005595707.1 hydrolase -
  APP7_RS00380 (APP7_0071) - 83412..83756 (-) 345 WP_005600044.1 RidA family protein -
  APP7_RS00385 (APP7_0072) - 83843..84880 (-) 1038 WP_005595712.1 branched-chain amino acid aminotransferase -
  APP7_RS00390 (APP7_0073) grxD 85022..85354 (-) 333 WP_005600046.1 Grx4 family monothiol glutaredoxin -
  APP7_RS00395 (APP7_0074) recR 85426..86031 (-) 606 WP_026042312.1 recombination mediator RecR Machinery gene
  APP7_RS00400 (APP7_0075) - 86102..86431 (-) 330 WP_005600053.1 YbaB/EbfC family nucleoid-associated protein -
  APP7_RS00405 (APP7_0076) - 86600..87457 (-) 858 WP_005595716.1 energy transducer TonB -
  APP7_RS00410 (APP7_0077) exbD 87467..87856 (-) 390 WP_005595717.1 TonB system transport protein ExbD -
  APP7_RS00415 (APP7_0078) exbB 87901..88353 (-) 453 WP_005595719.1 TonB-system energizer ExbB -
  APP7_RS00420 (APP7_0079) glpE 88541..88867 (+) 327 WP_005606763.1 thiosulfate sulfurtransferase GlpE -
  APP7_RS00425 (APP7_0080) - 88911..89756 (+) 846 WP_005603255.1 co-chaperone YbbN -
  APP7_RS00430 (APP7_0081) dhaM 89830..90237 (-) 408 WP_005595723.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  APP7_RS00435 (APP7_0082) dhaL 90246..90872 (-) 627 WP_005595724.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22164.37 Da        Isoelectric Point: 6.4865

>NTDB_id=28467 APP7_RS00395 WP_026042312.1 85426..86031(-) (recR) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
MQISPLLENLIEALRALPGVGPKSAQRMAYHLLQRNRSGGINLSKALNEAMTHIGHCRSCRTFTEEDECNICKNPRRQMS
GQLCVVEMPEDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQSRLENESFHEVILATNPTIEGDATANYIAEM
CRIHNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=28467 APP7_RS00395 WP_026042312.1 85426..86031(-) (recR) [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
ATGCAAATTAGCCCTTTACTCGAAAATCTGATAGAAGCCCTACGTGCATTACCCGGTGTCGGCCCGAAATCCGCGCAGCG
TATGGCATACCATTTATTGCAACGCAATCGTTCCGGCGGTATCAATTTATCCAAAGCCTTAAATGAAGCGATGACGCATA
TCGGTCATTGCCGTTCTTGCCGTACTTTTACCGAAGAAGACGAATGCAATATTTGTAAAAATCCTCGTCGCCAAATGAGC
GGTCAGCTTTGCGTAGTAGAAATGCCGGAAGATATTCAAGCGATTGAACAAACCGGACAGTTTTCGGGACGTTATTTCGT
ATTAATGGGACATCTTTCACCGCTAGACGGTATCGGACCGAGAGAAATCGGCTTGGATTTGTTACAAAGCCGTTTAGAAA
ACGAATCTTTTCACGAAGTTATTCTAGCTACCAATCCGACCATTGAAGGTGATGCCACCGCCAACTATATTGCGGAAATG
TGCCGCATTCACAACGTGAAAGTAACTCGAATTGCGCATGGGATTCCGGTCGGCGGTTCATTAGAAATGGTAGACGGTAC
GACCCTTTCCCACTCTTTTGCCGGCAGACGAGATATTTCGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.5

99.502

0.423

Multiple sequence alignment