Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   EGX83_RS12290 Genome accession   NZ_CP033768
Coordinates   2584416..2584931 (+) Length   171 a.a.
NCBI ID   WP_000477150.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain FDAARGOS_533     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2579416..2589931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX83_RS12275 (EGX83_12275) - 2579764..2581224 (+) 1461 WP_000004971.1 amino acid permease -
  EGX83_RS12280 (EGX83_12280) - 2581501..2582706 (+) 1206 WP_032067711.1 RtcB family protein -
  EGX83_RS18770 - 2582725..2582868 (+) 144 WP_162541494.1 hypothetical protein -
  EGX83_RS12285 (EGX83_12285) omp38 2582990..2584033 (-) 1044 WP_000777884.1 outer membrane protein Omp38 -
  EGX83_RS12290 (EGX83_12290) fimT 2584416..2584931 (+) 516 WP_000477150.1 GspH/FimT family pseudopilin Machinery gene
  EGX83_RS12295 (EGX83_12295) - 2585040..2586215 (+) 1176 WP_000129973.1 thiolase family protein -
  EGX83_RS12300 (EGX83_12300) - 2586342..2586782 (+) 441 Protein_2399 VOC family protein -
  EGX83_RS12305 (EGX83_12305) - 2586828..2587181 (-) 354 WP_000457784.1 DMT family transporter -
  EGX83_RS12310 (EGX83_12310) - 2587263..2587748 (-) 486 WP_000935245.1 DUF934 domain-containing protein -
  EGX83_RS12315 (EGX83_12315) - 2587741..2589384 (-) 1644 WP_000281766.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19640.87 Da        Isoelectric Point: 8.8196

>NTDB_id=284613 EGX83_RS12290 WP_000477150.1 2584416..2584931(+) (fimT) [Acinetobacter baumannii strain FDAARGOS_533]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=284613 EGX83_RS12290 WP_000477150.1 2584416..2584931(+) (fimT) [Acinetobacter baumannii strain FDAARGOS_533]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427

Multiple sequence alignment