Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EGX83_RS12115 Genome accession   NZ_CP033768
Coordinates   2548254..2548616 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain FDAARGOS_533     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2543254..2553616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX83_RS12105 (EGX83_12105) - 2545532..2547610 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  EGX83_RS12110 (EGX83_12110) - 2547657..2548193 (-) 537 WP_123793789.1 chemotaxis protein CheW -
  EGX83_RS12115 (EGX83_12115) pilH 2548254..2548616 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  EGX83_RS12120 (EGX83_12120) pilG 2548640..2549023 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  EGX83_RS12125 (EGX83_12125) - 2549307..2549945 (+) 639 WP_032059038.1 hypothetical protein -
  EGX83_RS12130 (EGX83_12130) - 2550005..2551123 (+) 1119 WP_032059039.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=284611 EGX83_RS12115 WP_000101096.1 2548254..2548616(-) (pilH) [Acinetobacter baumannii strain FDAARGOS_533]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=284611 EGX83_RS12115 WP_000101096.1 2548254..2548616(-) (pilH) [Acinetobacter baumannii strain FDAARGOS_533]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392