Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EGX78_RS05300 Genome accession   NZ_CP033767
Coordinates   999587..1000657 (-) Length   356 a.a.
NCBI ID   WP_123949440.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain FDAARGOS_534     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 994587..1005657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX78_RS05285 (EGX78_05290) - 995762..997159 (+) 1398 WP_002989754.1 oxaloacetate decarboxylase subunit alpha -
  EGX78_RS05290 (EGX78_05295) citC 997270..998322 (-) 1053 WP_002989752.1 [citrate (pro-3S)-lyase] ligase -
  EGX78_RS05295 (EGX78_05300) - 998411..998893 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  EGX78_RS05300 (EGX78_05305) xerS 999587..1000657 (-) 1071 WP_123949440.1 tyrosine recombinase XerS Machinery gene
  EGX78_RS05305 (EGX78_05310) - 1001127..1001825 (+) 699 WP_002989749.1 helix-turn-helix transcriptional regulator -
  EGX78_RS05310 (EGX78_05315) ffh 1001960..1003522 (-) 1563 WP_032461517.1 signal recognition particle protein -
  EGX78_RS05315 (EGX78_05320) - 1003537..1003869 (-) 333 WP_002989745.1 putative DNA-binding protein -
  EGX78_RS05320 (EGX78_05325) - 1003967..1004665 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.58 Da        Isoelectric Point: 9.5591

>NTDB_id=284530 EGX78_RS05300 WP_123949440.1 999587..1000657(-) (xerS) [Streptococcus pyogenes strain FDAARGOS_534]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKRKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=284530 EGX78_RS05300 WP_123949440.1 999587..1000657(-) (xerS) [Streptococcus pyogenes strain FDAARGOS_534]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAGGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803