Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C7R96_RS05545 Genome accession   NZ_CP028381
Coordinates   1100345..1100974 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RM10466     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095345..1105974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R96_RS05520 (C7R96_05520) ycbZ 1095735..1097495 (-) 1761 WP_000156526.1 Lon protease family protein -
  C7R96_RS05525 (C7R96_05525) matP 1097681..1098133 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C7R96_RS05530 (C7R96_05530) ompA 1098208..1099260 (-) 1053 WP_000750419.1 porin OmpA -
  C7R96_RS05540 (C7R96_05540) sulA 1099617..1100126 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C7R96_RS05545 (C7R96_05545) sxy/tfoX 1100345..1100974 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C7R96_RS05550 (C7R96_05550) yccS 1100937..1103099 (-) 2163 WP_000875044.1 YccS family putative transporter -
  C7R96_RS05555 (C7R96_05555) yccF 1103109..1103555 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C7R96_RS05560 (C7R96_05560) helD 1103678..1105732 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=284510 C7R96_RS05545 WP_000839153.1 1100345..1100974(+) (sxy/tfoX) [Escherichia coli strain RM10466]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=284510 C7R96_RS05545 WP_000839153.1 1100345..1100974(+) (sxy/tfoX) [Escherichia coli strain RM10466]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment