Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EGX93_RS25365 Genome accession   NZ_CP033762
Coordinates   4972075..4972680 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain FDAARGOS_536     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4967075..4977680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS26265 - 4967629..4967727 (+) 99 Protein_4738 hypothetical protein -
  EGX93_RS25335 (EGX93_25350) rsmS 4967780..4967941 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EGX93_RS25340 (EGX93_25355) priC 4967955..4968482 (-) 528 WP_000844853.1 primosomal replication protein N'' -
  EGX93_RS25345 (EGX93_25360) ybaN 4968552..4968929 (+) 378 WP_001188900.1 DUF454 family protein -
  EGX93_RS25350 (EGX93_25365) apt 4969082..4969633 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EGX93_RS25355 (EGX93_25370) dnaX 4969762..4971693 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  EGX93_RS25360 (EGX93_25375) ybaB 4971746..4972075 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EGX93_RS25365 (EGX93_25380) recR 4972075..4972680 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EGX93_RS25370 (EGX93_25385) htpG 4972790..4974664 (+) 1875 WP_000678189.1 molecular chaperone HtpG -
  EGX93_RS25375 (EGX93_25390) adk 4974845..4975489 (+) 645 WP_001313630.1 adenylate kinase -
  EGX93_RS25380 (EGX93_25395) hemH 4975621..4976583 (+) 963 WP_001250114.1 ferrochelatase -
  EGX93_RS25385 (EGX93_25400) aes 4976580..4977539 (-) 960 WP_042019597.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=284482 EGX93_RS25365 WP_001195025.1 4972075..4972680(+) (recR) [Escherichia coli strain FDAARGOS_536]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=284482 EGX93_RS25365 WP_001195025.1 4972075..4972680(+) (recR) [Escherichia coli strain FDAARGOS_536]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGTGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443