Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGX93_RS22065 Genome accession   NZ_CP033762
Coordinates   4303271..4303747 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4298271..4308747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS22035 (EGX93_22040) - 4298438..4300954 (+) 2517 WP_016238748.1 hypothetical protein -
  EGX93_RS22040 (EGX93_22045) - 4301030..4301485 (+) 456 WP_000581504.1 IrmA family protein -
  EGX93_RS22045 (EGX93_22050) - 4301564..4301797 (+) 234 WP_001119729.1 DUF905 family protein -
  EGX93_RS22055 (EGX93_22060) - 4301897..4302715 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  EGX93_RS22060 (EGX93_22065) - 4302770..4303255 (+) 486 WP_016237304.1 antirestriction protein -
  EGX93_RS22065 (EGX93_22070) radC 4303271..4303747 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  EGX93_RS22070 (EGX93_22075) - 4303810..4304031 (+) 222 WP_000692352.1 DUF987 domain-containing protein -
  EGX93_RS22075 (EGX93_22080) - 4304194..4304562 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EGX93_RS22080 (EGX93_22085) - 4304652..4305026 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  EGX93_RS22085 (EGX93_22090) - 4305023..4305514 (+) 492 WP_000976842.1 DUF5983 family protein -
  EGX93_RS22090 (EGX93_22095) - 4305531..4305707 (+) 177 WP_000839290.1 DUF957 domain-containing protein -
  EGX93_RS25895 - 4305813..4305962 (+) 150 Protein_4105 hypothetical protein -
  EGX93_RS26350 (EGX93_22100) - 4305932..4306066 (+) 135 Protein_4106 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=284473 EGX93_RS22065 WP_001186773.1 4303271..4303747(+) (radC) [Escherichia coli strain FDAARGOS_536]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=284473 EGX93_RS22065 WP_001186773.1 4303271..4303747(+) (radC) [Escherichia coli strain FDAARGOS_536]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment