Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   C9888_RS16570 Genome accession   NZ_CP028375
Coordinates   3274555..3274695 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain W1     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3269555..3279695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS16545 - 3269869..3270252 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  C9888_RS16550 comA 3270274..3270918 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  C9888_RS16555 comP 3270999..3273350 (-) 2352 WP_269800792.1 histidine kinase Regulator
  C9888_RS16560 comX 3273328..3273498 (-) 171 WP_032863917.1 competence pheromone ComX -
  C9888_RS16565 - 3273498..3274424 (-) 927 WP_014721741.1 polyprenyl synthetase family protein -
  C9888_RS16570 degQ 3274555..3274695 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  C9888_RS16580 - 3275161..3275502 (+) 342 WP_014418765.1 hypothetical protein -
  C9888_RS16585 - 3275509..3276732 (-) 1224 WP_014418766.1 EAL and HDOD domain-containing protein -
  C9888_RS16590 - 3276862..3278328 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  C9888_RS16595 - 3278346..3278897 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  C9888_RS16600 - 3278994..3279392 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=284471 C9888_RS16570 WP_003152043.1 3274555..3274695(-) (degQ) [Bacillus velezensis strain W1]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=284471 C9888_RS16570 WP_003152043.1 3274555..3274695(-) (degQ) [Bacillus velezensis strain W1]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891

Multiple sequence alignment