Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C9888_RS14645 Genome accession   NZ_CP028375
Coordinates   2907670..2908422 (-) Length   250 a.a.
NCBI ID   WP_014418548.1    Uniprot ID   I2C8I4
Organism   Bacillus velezensis strain W1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2902670..2913422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS14620 mreC 2903106..2903969 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  C9888_RS14625 mreB 2904000..2905013 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  C9888_RS14630 radC 2905105..2905800 (-) 696 WP_007408165.1 DNA repair protein RadC -
  C9888_RS14635 - 2905832..2906401 (-) 570 WP_012118105.1 Maf family protein -
  C9888_RS14640 - 2906542..2907543 (-) 1002 WP_014418547.1 SPOR domain-containing protein -
  C9888_RS14645 comC 2907670..2908422 (-) 753 WP_014418548.1 A24 family peptidase Machinery gene
  C9888_RS14650 - 2908562..2909854 (-) 1293 WP_014418549.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C9888_RS14655 - 2909913..2912555 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  C9888_RS14660 - 2913008..2913199 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27261.96 Da        Isoelectric Point: 9.4293

>NTDB_id=284464 C9888_RS14645 WP_014418548.1 2907670..2908422(-) (comC) [Bacillus velezensis strain W1]
MLLFLFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=284464 C9888_RS14645 WP_014418548.1 2907670..2908422(-) (comC) [Bacillus velezensis strain W1]
GTGCTTTTGTTTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATTGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C8I4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576

Multiple sequence alignment