Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C9888_RS13520 Genome accession   NZ_CP028375
Coordinates   2710733..2711500 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain W1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2705733..2716500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS13500 - 2705935..2706747 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  C9888_RS13505 ccpN 2706773..2707411 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  C9888_RS13510 glyS 2707512..2709551 (-) 2040 WP_014418405.1 glycine--tRNA ligase subunit beta -
  C9888_RS13515 glyQ 2709544..2710431 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  C9888_RS13520 recO 2710733..2711500 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  C9888_RS13525 - 2711537..2711680 (-) 144 WP_007408286.1 YqzL family protein -
  C9888_RS13530 era 2711837..2712742 (-) 906 WP_007408285.1 GTPase Era -
  C9888_RS13535 - 2712723..2713133 (-) 411 WP_003152976.1 cytidine deaminase -
  C9888_RS13540 - 2713257..2713631 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  C9888_RS13545 ybeY 2713612..2714085 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  C9888_RS13550 - 2714086..2716218 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=284457 C9888_RS13520 WP_007408287.1 2710733..2711500(-) (recO) [Bacillus velezensis strain W1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=284457 C9888_RS13520 WP_007408287.1 2710733..2711500(-) (recO) [Bacillus velezensis strain W1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCCCAAACGGCAAGACTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment