Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGX93_RS17885 Genome accession   NZ_CP033762
Coordinates   3455610..3456278 (-) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli strain FDAARGOS_536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3450610..3461278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS17855 (EGX93_17840) rfaQ 3450788..3451846 (-) 1059 WP_000360417.1 lipopolysaccharide core heptosyltransferase RfaQ -
  EGX93_RS17860 (EGX93_17845) waaA 3452259..3453536 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  EGX93_RS17865 (EGX93_17850) coaD 3453544..3454023 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  EGX93_RS17870 (EGX93_17855) mutM 3454062..3454871 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  EGX93_RS17875 (EGX93_17860) rpmG 3454969..3455136 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  EGX93_RS17880 (EGX93_17865) rpmB 3455157..3455393 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  EGX93_RS17885 (EGX93_17870) radC 3455610..3456278 (-) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  EGX93_RS17890 (EGX93_17875) coaBC 3456450..3457670 (+) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EGX93_RS17895 (EGX93_17880) dut 3457648..3458106 (+) 459 WP_000976066.1 dUTP diphosphatase -
  EGX93_RS17900 (EGX93_17885) slmA 3458213..3458809 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  EGX93_RS17905 (EGX93_17890) pyrE 3458846..3459487 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  EGX93_RS17910 (EGX93_17895) rph 3459553..3460269 (-) 717 WP_001247093.1 ribonuclease PH -
  EGX93_RS17915 (EGX93_17900) yicC 3460396..3461259 (+) 864 WP_021521117.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=284448 EGX93_RS17885 WP_001296533.1 3455610..3456278(-) (radC) [Escherichia coli strain FDAARGOS_536]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=284448 EGX93_RS17885 WP_001296533.1 3455610..3456278(-) (radC) [Escherichia coli strain FDAARGOS_536]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment