Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C9888_RS11955 Genome accession   NZ_CP028375
Coordinates   2379719..2380327 (+) Length   202 a.a.
NCBI ID   WP_014418235.1    Uniprot ID   -
Organism   Bacillus velezensis strain W1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2374719..2385327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS11915 - 2375739..2376245 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  C9888_RS11920 - 2376384..2376797 (+) 414 WP_007612169.1 hypothetical protein -
  C9888_RS11925 - 2376827..2377294 (-) 468 WP_014418231.1 YppG family protein -
  C9888_RS11930 - 2377481..2377663 (+) 183 WP_003153532.1 YppF family protein -
  C9888_RS11935 - 2377702..2378070 (-) 369 WP_014418232.1 YppE family protein -
  C9888_RS11940 - 2378116..2378361 (-) 246 WP_014418233.1 DUF5446 family protein -
  C9888_RS11945 sspM 2378567..2378671 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  C9888_RS11950 - 2378715..2379677 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  C9888_RS11955 recU 2379719..2380327 (+) 609 WP_014418235.1 Holliday junction resolvase RecU Machinery gene
  C9888_RS11960 - 2380366..2383155 (+) 2790 WP_014418236.1 PBP1A family penicillin-binding protein -
  C9888_RS11965 - 2383233..2383724 (-) 492 WP_012117839.1 YpoC family protein -
  C9888_RS11970 nth 2383721..2384380 (-) 660 WP_007612187.1 endonuclease III -
  C9888_RS11975 dnaD 2384399..2385097 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=284446 C9888_RS11955 WP_014418235.1 2379719..2380327(+) (recU) [Bacillus velezensis strain W1]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=284446 C9888_RS11955 WP_014418235.1 2379719..2380327(+) (recU) [Bacillus velezensis strain W1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

91.457

98.515

0.901

Multiple sequence alignment