Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C9888_RS07175 Genome accession   NZ_CP028375
Coordinates   1364370..1364834 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus velezensis strain W1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359370..1369834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS07155 - 1359851..1361671 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  C9888_RS07160 - 1361696..1362865 (-) 1170 WP_007611083.1 aminotransferase A -
  C9888_RS21590 - 1363066..1363227 (-) 162 WP_007409608.1 hypothetical protein -
  C9888_RS07170 cheV 1363416..1364327 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  C9888_RS07175 kre 1364370..1364834 (-) 465 WP_014417605.1 YkyB family protein Regulator
  C9888_RS07180 - 1364957..1366249 (-) 1293 WP_014417606.1 MFS transporter -
  C9888_RS07185 - 1366325..1366819 (-) 495 WP_088056573.1 L,D-transpeptidase family protein -
  C9888_RS07190 - 1366894..1367757 (-) 864 WP_014417608.1 metallophosphoesterase -
  C9888_RS07195 fadH 1367901..1368665 (+) 765 WP_014417609.1 2,4-dienoyl-CoA reductase -
  C9888_RS07200 - 1368779..1369327 (+) 549 WP_014417610.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=284438 C9888_RS07175 WP_014417605.1 1364370..1364834(-) (kre) [Bacillus velezensis strain W1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=284438 C9888_RS07175 WP_014417605.1 1364370..1364834(-) (kre) [Bacillus velezensis strain W1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTAACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment