Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   C9888_RS05730 Genome accession   NZ_CP028375
Coordinates   1094577..1095530 (+) Length   317 a.a.
NCBI ID   WP_014417407.1    Uniprot ID   A0AAP4DIE0
Organism   Bacillus velezensis strain W1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089577..1100530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS05700 argF 1091394..1092365 (+) 972 WP_014417404.1 ornithine carbamoyltransferase -
  C9888_RS05705 - 1092441..1092620 (+) 180 WP_003155070.1 YjzC family protein -
  C9888_RS05710 - 1092657..1092842 (-) 186 WP_007409129.1 YjzD family protein -
  C9888_RS05720 - 1093103..1093837 (+) 735 WP_014417405.1 hypothetical protein -
  C9888_RS05725 - 1093920..1094486 (+) 567 WP_032863798.1 hypothetical protein -
  C9888_RS05730 med 1094577..1095530 (+) 954 WP_014417407.1 BMP family ABC transporter substrate-binding protein Regulator
  C9888_RS05735 comZ 1095543..1095734 (+) 192 WP_014417408.1 ComZ family protein Regulator
  C9888_RS05740 - 1095763..1095981 (-) 219 WP_007409123.1 hypothetical protein -
  C9888_RS05745 - 1096148..1097086 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  C9888_RS05750 fabF 1097109..1098347 (+) 1239 WP_014417409.1 beta-ketoacyl-ACP synthase II -
  C9888_RS05755 - 1098430..1099215 (+) 786 WP_014417410.1 DUF2268 domain-containing protein -
  C9888_RS05760 - 1099389..1100375 (+) 987 WP_014417411.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35343.93 Da        Isoelectric Point: 4.6686

>NTDB_id=284430 C9888_RS05730 WP_014417407.1 1094577..1095530(+) (med) [Bacillus velezensis strain W1]
MITRLVMTFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKNNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=284430 C9888_RS05730 WP_014417407.1 1094577..1095530(+) (med) [Bacillus velezensis strain W1]
TTGATCACCAGGCTTGTCATGACCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGGACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATTTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAAACAATGAGGTCGGCGTCATCGCCTCTTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGAGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACAGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

77.918

100

0.779

Multiple sequence alignment