Detailed information NTG0284426

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGX93_RS12695
• Genome accession: NZ_CP033762
• Coordinates: 2382833..2383825 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_536
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2377833..2388825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGX93_RS12675 (EGX93_12660)	ygbM	2378464..2379240 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
EGX93_RS12680 (EGX93_12665)	ygbN	2379329..2380693 (+)	1365	WP_000104433.1	GntP family transporter	-
EGX93_RS12685 (EGX93_12670)	-	2380836..2381879 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
EGX93_RS12690 (EGX93_12675)	-	2382104..2382655 (+)	552	WP_042020257.1	flavodoxin family protein	-
EGX93_RS12695 (EGX93_12680)	rpoS	2382833..2383825 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EGX93_RS12700 (EGX93_12685)	nlpD	2383888..2384982 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EGX93_RS12705 (EGX93_12690)	pcm	2385167..2385793 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
EGX93_RS12710 (EGX93_12695)	surE	2385787..2386548 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EGX93_RS12715 (EGX93_12700)	truD	2386529..2387578 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
EGX93_RS12720 (EGX93_12705)	ispF	2387575..2388054 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGX93_RS12725 (EGX93_12710)	ispD	2388054..2388764 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=284426 EGX93_RS12695 WP_000081550.1 2382833..2383825(-) (rpoS) [Escherichia coli strain FDAARGOS_536]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=284426 EGX93_RS12695 WP_000081550.1 2382833..2383825(-) (rpoS) [Escherichia coli strain FDAARGOS_536]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715