Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EGX93_RS12395 Genome accession   NZ_CP033762
Coordinates   2330026..2330541 (-) Length   171 a.a.
NCBI ID   WP_042018900.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_536     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2325026..2335541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS12365 (EGX93_12355) ygaH 2325441..2325776 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  EGX93_RS12370 (EGX93_12360) emrR 2325867..2326397 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EGX93_RS12375 (EGX93_12365) emrA 2326524..2327696 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EGX93_RS12380 (EGX93_12370) emrB 2327713..2329251 (+) 1539 WP_001337983.1 multidrug efflux MFS transporter permease subunit EmrB -
  EGX93_RS12390 (EGX93_12380) tnpA 2329431..2329889 (+) 459 WP_000526113.1 IS200/IS605-like element IS200C family transposase -
  EGX93_RS12395 (EGX93_12385) luxS 2330026..2330541 (-) 516 WP_042018900.1 S-ribosylhomocysteine lyase Regulator
  EGX93_RS12400 (EGX93_12390) gshA 2330691..2332247 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EGX93_RS12405 (EGX93_12395) yqaA 2332320..2332748 (-) 429 WP_001287462.1 YqaA family protein -
  EGX93_RS12410 (EGX93_12400) yqaB 2332745..2333311 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EGX93_RS12440 (EGX93_12430) csrA 2334500..2334685 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19413.19 Da        Isoelectric Point: 5.0362

>NTDB_id=284423 EGX93_RS12395 WP_042018900.1 2330026..2330541(-) (luxS) [Escherichia coli strain FDAARGOS_536]
MPLLDSFTVDHTRMEAPAVRVAKAMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=284423 EGX93_RS12395 WP_042018900.1 2330026..2330541(-) (luxS) [Escherichia coli strain FDAARGOS_536]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAGCAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731