Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C9888_RS00245 Genome accession   NZ_CP028375
Coordinates   45740..46030 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain W1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40740..51030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS00205 darA 40758..41087 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  C9888_RS00210 - 41100..41540 (+) 441 WP_004264730.1 DUF327 family protein -
  C9888_RS00215 holB 41552..42541 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  C9888_RS00220 ricT 42544..43371 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  C9888_RS00225 yabA 43386..43745 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  C9888_RS00230 - 43806..44549 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C9888_RS00235 - 44536..44835 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  C9888_RS00240 rsmI 44810..45691 (+) 882 WP_014416718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C9888_RS00245 abrB 45740..46030 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  C9888_RS00250 metG 46513..48504 (+) 1992 WP_014416719.1 methionine--tRNA ligase -
  C9888_RS00255 - 48581..49348 (+) 768 WP_032864028.1 TatD family hydrolase -
  C9888_RS00260 - 49483..50808 (+) 1326 WP_014720609.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=284412 C9888_RS00245 WP_169510469.1 45740..46030(-) (abrB) [Bacillus velezensis strain W1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=284412 C9888_RS00245 WP_169510469.1 45740..46030(-) (abrB) [Bacillus velezensis strain W1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment