Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EGX93_RS08935 Genome accession   NZ_CP033762
Coordinates   1598524..1599951 (+) Length   475 a.a.
NCBI ID   WP_001538915.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_536     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1593524..1604951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX93_RS08905 (EGX93_08905) pduU 1593903..1594253 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  EGX93_RS08910 (EGX93_08910) - 1594258..1594701 (+) 444 WP_024009133.1 EutP/PduV family microcompartment system protein -
  EGX93_RS08915 (EGX93_08915) tmaR 1594801..1595130 (-) 330 WP_000450409.1 DUF496 family protein -
  EGX93_RS08920 (EGX93_08920) yeeA 1595301..1596359 (-) 1059 WP_001200890.1 FUSC family protein -
  EGX93_RS08925 (EGX93_08925) sbmC 1596557..1597030 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  EGX93_RS08930 (EGX93_08930) dacD 1597149..1598315 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EGX93_RS08935 (EGX93_08935) sbcB 1598524..1599951 (+) 1428 WP_001538915.1 exodeoxyribonuclease I Machinery gene
  EGX93_RS08940 (EGX93_08940) tsuB 1599994..1600221 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EGX93_RS08945 (EGX93_08945) tsuA 1600235..1601293 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  EGX93_RS08950 (EGX93_08950) plaP 1601472..1602830 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EGX93_RS08955 (EGX93_08955) yoeI 1602820..1602882 (-) 63 WP_010723108.1 membrane protein YoeI -
  EGX93_RS08960 (EGX93_08960) yeeY 1603097..1604026 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  EGX93_RS08965 (EGX93_08965) yeeZ 1604072..1604896 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54483.79 Da        Isoelectric Point: 5.4720

>NTDB_id=284412 EGX93_RS08935 WP_001538915.1 1598524..1599951(+) (sbcB) [Escherichia coli strain FDAARGOS_536]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=284412 EGX93_RS08935 WP_001538915.1 1598524..1599951(+) (sbcB) [Escherichia coli strain FDAARGOS_536]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment