Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   A17_RS06940 Genome accession   NZ_CP028372
Coordinates   1322858..1323826 (+) Length   322 a.a.
NCBI ID   WP_002872671.1    Uniprot ID   Q0P8Q7
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1317858..1328826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS06915 (A17_01399) cdsA 1318768..1319493 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  A17_RS06920 (A17_01400) - 1319502..1319840 (-) 339 WP_002852397.1 hypothetical protein -
  A17_RS06925 (A17_01401) - 1319842..1321149 (-) 1308 WP_126655094.1 NFACT family protein -
  A17_RS06930 (A17_01402) mobA 1321211..1321786 (+) 576 WP_002858185.1 molybdenum cofactor guanylyltransferase -
  A17_RS06935 (A17_01403) pldA 1321783..1322772 (+) 990 WP_002871962.1 phospholipase A -
  A17_RS06940 (A17_01404) ceuB 1322858..1323826 (+) 969 WP_002872671.1 ABC transporter permease Machinery gene
  A17_RS06945 (A17_01405) ceuC 1323819..1324757 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  A17_RS06950 (A17_01406) ceuD 1324754..1325509 (+) 756 WP_002873631.1 ABC transporter ATP-binding protein -
  A17_RS06955 (A17_01407) ceuB 1325522..1326514 (+) 993 WP_002873632.1 enterochelin ABC transporter substrate-binding protein CeuB -
  A17_RS06960 (A17_01408) - 1326669..1326890 (+) 222 WP_002856036.1 hypothetical protein -
  A17_RS06965 (A17_01409) - 1326891..1327172 (+) 282 WP_002856297.1 type II toxin-antitoxin system RelE/ParE family toxin -
  A17_RS06975 (A17_01411) - 1327532..1328086 (-) 555 WP_126655095.1 hypothetical protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35469.40 Da        Isoelectric Point: 9.6678

>NTDB_id=284394 A17_RS06940 WP_002872671.1 1322858..1323826(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain huA17]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=284394 A17_RS06940 WP_002872671.1 1322858..1323826(+) (ceuB) [Campylobacter jejuni subsp. jejuni strain huA17]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q0P8Q7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991


Multiple sequence alignment