Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   A17_RS05925 Genome accession   NZ_CP028372
Coordinates   1121930..1122889 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1102232..1135107 1121930..1122889 within 0


Gene organization within MGE regions


Location: 1102232..1135107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS05835 (A17_01180) pglI 1102232..1103161 (-) 930 WP_002852770.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  A17_RS05840 (A17_01181) pglH 1103154..1104233 (-) 1080 WP_072223331.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  A17_RS05845 (A17_01182) pglK 1104230..1105924 (-) 1695 WP_002871717.1 ABC-type lipopolysaccharide transporter PglK -
  A17_RS05850 (A17_01183) galE 1105918..1106904 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  A17_RS05855 (A17_01184) - 1106962..1107756 (-) 795 WP_002875164.1 3'-5' exonuclease -
  A17_RS05860 (A17_01185) waaC 1107822..1108850 (+) 1029 WP_126655066.1 lipopolysaccharide heptosyltransferase I -
  A17_RS05865 (A17_01186) htrB 1108840..1109727 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  A17_RS05870 (A17_01187) - 1109724..1111271 (+) 1548 WP_002875163.1 glycosyltransferase -
  A17_RS05875 (A17_01188) - 1111275..1112447 (+) 1173 WP_002858013.1 glycosyltransferase family 2 protein -
  A17_RS05880 (A17_01189) - 1112431..1113426 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  A17_RS05885 (A17_01190) - 1113484..1114652 (+) 1169 Protein_1134 glycosyltransferase family 2 protein -
  A17_RS05890 (A17_01192) wlaN 1114641..1115549 (-) 909 WP_126655067.1 beta-1,3 galactosyltransferase -
  A17_RS05895 (A17_01193) cstIII 1115604..1116488 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  A17_RS05900 (A17_01194) neuB1 1116469..1117500 (+) 1032 WP_002858213.1 sialic acid synthase -
  A17_RS05905 (A17_01195) neuC 1117497..1118612 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  A17_RS10045 - 1118609..1119523 (+) 915 Protein_1139 beta-1,4-N-acetylgalactosaminyltransferase -
  A17_RS10050 - 1119557..1120219 (+) 663 WP_032596875.1 acylneuraminate cytidylyltransferase -
  A17_RS05915 (A17_01197) - 1120214..1121063 (-) 850 Protein_1141 glycosyltransferase -
  A17_RS05920 (A17_01199) waaV 1121047..1121871 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  A17_RS05925 (A17_01200) waaF 1121930..1122889 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  A17_RS05930 (A17_01201) gmhA 1122870..1123430 (-) 561 WP_002875424.1 D-sedoheptulose 7-phosphate isomerase -
  A17_RS05935 (A17_01202) rfaE1 1123427..1124812 (-) 1386 WP_002858114.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  A17_RS05940 (A17_01203) rfaD 1124805..1125758 (-) 954 WP_052794327.1 ADP-glyceromanno-heptose 6-epimerase -
  A17_RS05945 (A17_01204) gmhB 1125755..1126319 (-) 565 Protein_1147 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  A17_RS05950 (A17_01205) - 1126400..1126702 (+) 303 WP_002852762.1 cytochrome c -
  A17_RS05955 (A17_01206) ccoS 1126725..1126931 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  A17_RS05960 (A17_01207) - 1126928..1129285 (-) 2358 WP_079461021.1 heavy metal translocating P-type ATPase -
  A17_RS05965 (A17_01208) rho 1129394..1130692 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  A17_RS05970 (A17_01209) dnaX 1130696..1132225 (+) 1530 WP_052794325.1 DNA polymerase III subunit gamma/tau -
  A17_RS05975 - 1132222..1132422 (-) 201 Protein_1153 DUF2165 family protein -
  A17_RS05985 (A17_01210) - 1132563..1132742 (-) 180 WP_002917130.1 DUF2165 family protein -
  A17_RS05990 (A17_01211) copA 1132814..1134913 (-) 2100 WP_052794324.1 copper-translocating P-type ATPase CopA -
  A17_RS05995 (A17_01212) - 1134913..1135107 (-) 195 WP_002852760.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=284389 A17_RS05925 WP_002875425.1 1121930..1122889(+) (waaF) [Campylobacter jejuni subsp. jejuni strain huA17]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=284389 A17_RS05925 WP_002875425.1 1121930..1122889(+) (waaF) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment