Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   A17_RS03655 Genome accession   NZ_CP028372
Coordinates   676192..676629 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671192..681629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS09850 - 671685..672836 (+) 1152 WP_250533389.1 sensor histidine kinase KdpD -
  A17_RS09855 - 672860..673504 (+) 645 WP_223212446.1 DUF4118 domain-containing protein -
  A17_RS03640 (A17_00738) uvrB 673606..675579 (-) 1974 WP_002898591.1 excinuclease ABC subunit UvrB -
  A17_RS03645 (A17_00739) - 675733..675963 (+) 231 WP_002852327.1 hypothetical protein -
  A17_RS03650 (A17_00740) - 675953..676195 (+) 243 WP_002854947.1 hypothetical protein -
  A17_RS03655 (A17_00741) Cj0683 676192..676629 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  A17_RS03660 (A17_00742) priA 676611..678464 (+) 1854 WP_002866530.1 primosomal protein N' -
  A17_RS03665 (A17_00743) cipA 678474..679868 (-) 1395 WP_002874888.1 DUF2972 domain-containing protein -
  A17_RS03670 (A17_00744) ispG 680014..681087 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=284384 A17_RS03655 WP_002852324.1 676192..676629(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain huA17]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=284384 A17_RS03655 WP_002852324.1 676192..676629(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment