Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   CLIM_RS02475 Genome accession   NC_010803
Coordinates   550833..552077 (+) Length   414 a.a.
NCBI ID   WP_012465459.1    Uniprot ID   -
Organism   Chlorobium limicola DSM 245     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 545833..557077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLIM_RS02465 (Clim_0483) - 547137..547850 (-) 714 WP_012465457.1 type 1 glutamine amidotransferase -
  CLIM_RS02470 (Clim_0484) - 547894..550437 (-) 2544 WP_012465458.1 response regulator -
  CLIM_RS02475 (Clim_0485) cqsA 550833..552077 (+) 1245 WP_012465459.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  CLIM_RS02480 - 552074..552286 (+) 213 WP_041465635.1 hypothetical protein -
  CLIM_RS02485 (Clim_0487) - 552506..552910 (-) 405 WP_012465461.1 rhodanese-like domain-containing protein -
  CLIM_RS02500 (Clim_0490) - 554188..554622 (+) 435 WP_081429869.1 H-NS family nucleoid-associated regulatory protein -
  CLIM_RS02510 (Clim_0491) trpB 555247..556446 (-) 1200 WP_012465465.1 tryptophan synthase subunit beta -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 46054.25 Da        Isoelectric Point: 5.7449

>NTDB_id=28435 CLIM_RS02475 WP_012465459.1 550833..552077(+) (cqsA) [Chlorobium limicola DSM 245]
MFTDDSAFEQPGYGREFSVSVFPDFLEKRLQACHEELFAPRKNKKPLVLGNRMPDAAAIMLQSNDYLNVSNHPVIRRAQL
DTLNEISQEPVMSAVFLHENSGKHDFEKRMAAYTGFESAILCQSGWAANAGLMQVIADSTTPVYIDFFTHMSLWEGVKIA
GAVPYAFRHNDPSHLERLIREHGQGVVLVDSLYSTTGDISPLTEIVGIANRYGCISVVDESHSLGTHGEHGAGLVNECGL
AGQVHFITASLAKAFAGRAGIICCSAKFAKYYPYMAFPAIFSSTLLPFEIAGLSATLEVIEAGDDRRRALYEKSRYFRDR
LRELGYNIASQSQIVAIEGGLESNTELLRDALEDRNVFGSVFLAPATPKTRSLMRFSVHSGLAMEDLDYVLQVCEDIRDE
IDMWNWKSTKRQKT

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=28435 CLIM_RS02475 WP_012465459.1 550833..552077(+) (cqsA) [Chlorobium limicola DSM 245]
ATGTTTACTGATGACTCAGCTTTTGAACAACCCGGTTATGGGAGGGAGTTCTCCGTATCGGTCTTTCCGGATTTTCTTGA
AAAACGCCTTCAGGCTTGTCATGAAGAGCTGTTCGCACCAAGAAAAAACAAAAAACCCCTTGTTCTCGGAAATCGTATGC
CTGATGCCGCTGCTATCATGCTGCAGAGCAACGACTATCTGAACGTTTCAAACCATCCGGTTATTCGGCGGGCACAACTG
GATACCTTGAACGAGATATCTCAGGAACCGGTCATGTCGGCAGTTTTTCTTCATGAAAATAGCGGAAAACACGATTTTGA
AAAGCGAATGGCCGCATATACCGGTTTTGAAAGCGCTATTCTCTGTCAGTCCGGGTGGGCAGCCAATGCAGGATTGATGC
AGGTCATCGCAGACAGTACAACTCCGGTTTATATCGATTTTTTCACACATATGTCACTCTGGGAGGGTGTCAAGATTGCC
GGAGCGGTTCCGTATGCCTTTCGTCATAACGATCCTTCCCATCTTGAACGTCTGATCAGAGAACATGGGCAGGGAGTTGT
TCTGGTCGATTCTCTCTACAGTACTACCGGAGATATTTCGCCTCTCACCGAGATTGTCGGGATTGCCAATCGATATGGGT
GTATTTCCGTTGTCGATGAATCGCATTCTCTCGGAACGCATGGAGAGCATGGGGCCGGATTGGTCAATGAGTGCGGATTG
GCGGGTCAGGTGCATTTCATTACCGCAAGTCTTGCAAAGGCATTTGCCGGACGTGCCGGCATTATCTGTTGCTCCGCAAA
ATTCGCTAAATATTATCCTTATATGGCCTTTCCCGCGATTTTCAGTTCAACGCTTCTTCCCTTCGAAATTGCAGGACTGA
GCGCAACACTTGAAGTCATAGAGGCCGGAGATGATCGCAGACGGGCTCTTTATGAAAAATCACGCTATTTCCGGGACAGG
CTCAGGGAGCTTGGATACAACATTGCAAGTCAGTCGCAGATTGTCGCGATCGAAGGCGGTCTTGAATCCAATACGGAGCT
TTTACGTGATGCCCTTGAAGATCGAAATGTATTCGGATCGGTTTTTCTTGCGCCGGCTACACCAAAAACCCGTTCCCTGA
TGCGCTTTTCAGTGCATAGCGGGCTTGCTATGGAAGATCTCGACTATGTCCTCCAGGTTTGTGAAGATATCAGGGACGAG
ATAGACATGTGGAACTGGAAATCAACAAAACGACAGAAAACATGA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(59-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

49.479

92.754

0.459