Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C8I07_RS06230 Genome accession   NZ_CP028355
Coordinates   1473267..1474793 (+) Length   508 a.a.
NCBI ID   WP_011848081.1    Uniprot ID   A3D9U5
Organism   Shewanella baltica strain CW2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1468267..1479793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8I07_RS06215 (C8I07_06195) - 1468348..1470132 (-) 1785 WP_107404879.1 GGDEF domain-containing protein -
  C8I07_RS06220 (C8I07_06200) - 1470178..1471206 (-) 1029 WP_107402832.1 ABC transporter substrate-binding protein -
  C8I07_RS06225 (C8I07_06205) - 1471935..1473053 (-) 1119 WP_071940613.1 DUF1963 domain-containing protein -
  C8I07_RS06230 (C8I07_06210) comM 1473267..1474793 (+) 1527 WP_011848081.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C8I07_RS06235 (C8I07_06215) - 1474903..1475805 (+) 903 WP_107402833.1 acyltransferase -
  C8I07_RS06240 (C8I07_06220) - 1475813..1476757 (+) 945 WP_107402834.1 acyltransferase -
  C8I07_RS06245 (C8I07_06225) - 1476754..1477269 (-) 516 WP_107402835.1 DUF523 domain-containing protein -
  C8I07_RS06250 (C8I07_06230) - 1477569..1478336 (+) 768 WP_012090443.1 GntR family transcriptional regulator -
  C8I07_RS06255 (C8I07_06235) prpB 1478393..1479271 (+) 879 WP_071940617.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55467.79 Da        Isoelectric Point: 8.3615

>NTDB_id=284326 C8I07_RS06230 WP_011848081.1 1473267..1474793(+) (comM) [Shewanella baltica strain CW2]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRSPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKRARELQLARSGVLNSELTGKQLKRFSGISDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=284326 C8I07_RS06230 WP_011848081.1 1473267..1474793(+) (comM) [Shewanella baltica strain CW2]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCCCAAGTCACAGTTGAAGTGCATCTGAGTAA
CGGCTTACCGGCATTTAATCTAGTGGGATTACCCGAAGCGTCGGTGAAAGAAGCCCGCGAGCGGGTGCGCAGCGCGCTGA
TTAATGCAGGATTCGAGTTTCCGATGCGGCGGATAACCGTTAACCTCGCGCCAGCAGATTTACCTAAACAAGGTGGCCGC
TACGATTTACCCATAGCCGTGGGCATATTGGCCGCCTCGGAACAAATCCCTGCTAATAGTTTAAAAAATCTTGAGTTTGT
CGGTGAGTTGGCACTGTCTGGGCACATACGTTATTGCCAAGGATTATTACCGGCGATTATCGCAGCTAAGCGCCAAGACC
ATACCTTGATATTACCGCTGGATAATCGCCACGATGCCGAGCTAGTCGGCTATCCTAATGTGTTGTTTGGCTCGCACCTT
CAGAGCTTAGCCGCTTATTTACAGGGACAAAATCAGCTGCCGACGTTAGCGCCGCAATTAGAATGGATAAGCCAAGAGAC
GCCTGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCTGCGGGAA
ACCATAACCTCCTGATGCTTGGCCCGCCAGGTACGGGCAAAACCATGCTTGCCAGCCGCATGATGGCGCTATTGCCCGCG
CTTAATTATGAGGAAGCATTAGAAGTGGCGGCGATTCATTCCGTTGCCGGACTCGACATTAAGCCGCAGCATTTTTTGCA
GCGACCCTTTCGCTCGCCACACCACACGAGTTCATCGATATCCCTCGTGGGTGGCGGCAGTATTCCCAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCTCGAAAAGTCTTAGATTGCCTGCGCGAG
CCGATGGAGACCGGCGAAGTGGTGATTTCCCGCGCCGCCGCTAAGCTGACATTTTTGAGTCGCTTCCAATTGATCGCGGC
GATGAATCCTAGCCCGAGCGGTGATATTGATAGCCAACACAGATCGAGCCCCGAACAGATTCAACGTTATCTCTCAAGGC
TTTCTGGCCCGTTTCTCGACCGTTTCGATTTAACCATTGAAGTGCCCAAACTCCCCGCAGGAACCTTGACTCAAGCCGCG
CCGCAAACAGAAACCAGCCAAGATATCGCCAAGCGGGTCAAACGGGCGCGTGAGCTGCAACTCGCCCGTTCAGGCGTGCT
CAATAGCGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGGATCAGTGATGCTGATTTAGTGTTTTTGGAACAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGCTTCCACCGTATACAAAGAGTCGCGCGCACTATTGCCGATCTGGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCACGCTTATCCCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3D9U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.667

100

0.569
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Haemophilus influenzae Rd KW20

56.102

100

0.561
  comM Vibrio campbellii strain DS40M4

55.403

100

0.555
  comM Legionella pneumophila str. Paris

45.866

100

0.459
  comM Legionella pneumophila strain ERS1305867

45.866

100

0.459
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.952

97.638

0.429

Multiple sequence alignment