Detailed information NTG0284313

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EGV93_RS07170
• Genome accession: NZ_CP033686
• Coordinates: 1487572..1488576 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain H25883
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1482572..1493576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGV93_RS07140 (EGV93_07115)	fghA	1482664..1483515 (+)	852	WP_031685470.1	S-formylglutathione hydrolase	-
EGV93_RS07145 (EGV93_07120)	ispF	1483586..1484059 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EGV93_RS07150 (EGV93_07125)	truD	1484056..1485123 (+)	1068	WP_009313546.1	tRNA pseudouridine(13) synthase TruD	-
EGV93_RS07155 (EGV93_07130)	surE	1485111..1485860 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EGV93_RS07160 (EGV93_07135)	-	1485893..1486528 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EGV93_RS07165 (EGV93_07140)	-	1486574..1487467 (+)	894	WP_031685471.1	peptidoglycan DD-metalloendopeptidase family protein	-
EGV93_RS07170 (EGV93_07145)	rpoS	1487572..1488576 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EGV93_RS07175 (EGV93_07150)	fdxA	1489003..1489326 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EGV93_RS07180 (EGV93_07155)	mutS	1489393..1491960 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
EGV93_RS07190 (EGV93_07165)	-	1492086..1493093 (-)	1008	WP_023092575.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=284313 EGV93_RS07170 WP_003113871.1 1487572..1488576(+) (rpoS) [Pseudomonas aeruginosa strain H25883]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=284313 EGV93_RS07170 WP_003113871.1 1487572..1488576(+) (rpoS) [Pseudomonas aeruginosa strain H25883]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653