Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGV93_RS06175 Genome accession   NZ_CP033686
Coordinates   1272768..1273277 (+) Length   169 a.a.
NCBI ID   WP_058199548.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H25883     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1267768..1278277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGV93_RS06145 (EGV93_06125) - 1267883..1268158 (+) 276 WP_058199543.1 hypothetical protein -
  EGV93_RS06150 (EGV93_06130) - 1268163..1268687 (+) 525 WP_058199544.1 hypothetical protein -
  EGV93_RS06155 (EGV93_06135) - 1268704..1269075 (-) 372 WP_235582662.1 AlpA family phage regulatory protein -
  EGV93_RS06160 (EGV93_06140) - 1269161..1269979 (-) 819 WP_058199546.1 hypothetical protein -
  EGV93_RS06165 - 1269976..1270842 (-) 867 WP_123794453.1 HNH endonuclease signature motif containing protein -
  EGV93_RS06170 (EGV93_06145) - 1270847..1272397 (-) 1551 WP_058199547.1 AAA family ATPase -
  EGV93_RS06175 (EGV93_06150) radC 1272768..1273277 (+) 510 WP_058199548.1 DNA repair protein RadC Machinery gene
  EGV93_RS06180 (EGV93_06155) - 1273330..1275057 (-) 1728 WP_071562117.1 ATP-binding protein -
  EGV93_RS06185 (EGV93_06160) - 1275067..1276080 (-) 1014 WP_071562118.1 SIR2 family protein -
  EGV93_RS06190 (EGV93_06165) - 1276654..1277484 (+) 831 WP_058199550.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18901.55 Da        Isoelectric Point: 6.6110

>NTDB_id=284311 EGV93_RS06175 WP_058199548.1 1272768..1273277(+) (radC) [Pseudomonas aeruginosa strain H25883]
MSQLSFSSFDDALLVRDAHGRYLRASVDQILEAARQTIELKMQRGAEFTSPALVKEYLRNKLAGFEHEVFAVLFLDTRHR
LIEYREMFHGTIDSASVYPREVVKEALRLNAAAVILSHNHPSGNPEPSSADKVLTQRLKGALELVEVRTLDHVIVAGTDT
VSFAERGLV

Nucleotide


Download         Length: 510 bp        

>NTDB_id=284311 EGV93_RS06175 WP_058199548.1 1272768..1273277(+) (radC) [Pseudomonas aeruginosa strain H25883]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGACGCTTTGCTGGTGCGTGACGCCCATGGGCGCTATCTGCGGGCATCGGT
GGATCAAATTCTTGAAGCGGCACGCCAGACCATCGAGCTGAAGATGCAGCGTGGTGCTGAGTTCACTTCGCCGGCGCTGG
TCAAGGAGTACCTGCGCAACAAGCTGGCAGGCTTTGAGCATGAAGTCTTTGCGGTGCTGTTTCTGGATACACGTCACCGG
CTAATCGAGTACCGGGAGATGTTCCACGGCACTATCGACAGTGCATCGGTGTATCCGCGTGAAGTGGTCAAGGAAGCGCT
GCGGCTCAATGCGGCGGCGGTGATCCTCTCGCACAATCATCCGAGCGGGAATCCTGAGCCAAGTAGTGCCGACAAGGTGC
TGACGCAGAGGCTTAAGGGTGCGCTGGAGCTAGTCGAGGTGCGCACGCTCGACCACGTCATTGTGGCAGGTACAGATACA
GTATCGTTTGCCGAGCGAGGGCTGGTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.857

82.84

0.396