Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C9381_RS05120 Genome accession   NZ_CP028349
Coordinates   1096930..1098312 (+) Length   460 a.a.
NCBI ID   WP_003854897.1    Uniprot ID   A0A1I5CYX4
Organism   Pantoea vagans strain PV989     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1091930..1103312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9381_RS05085 (C9381_05075) - 1092995..1093405 (+) 411 WP_107319317.1 DNA polymerase III subunit psi -
  C9381_RS05090 (C9381_05080) rimI 1093377..1093817 (+) 441 WP_107319318.1 ribosomal protein S18-alanine N-acetyltransferase -
  C9381_RS05095 (C9381_05085) yjjG 1093836..1094516 (+) 681 WP_107319319.1 pyrimidine 5'-nucleotidase -
  C9381_RS05110 (C9381_05100) - 1095181..1095831 (-) 651 WP_095706238.1 YtjB family periplasmic protein -
  C9381_RS05115 (C9381_05105) serB 1095939..1096916 (+) 978 WP_107319321.1 phosphoserine phosphatase -
  C9381_RS05120 (C9381_05110) radA 1096930..1098312 (+) 1383 WP_003854897.1 DNA repair protein RadA Machinery gene
  C9381_RS05125 (C9381_05115) nadR 1098384..1099625 (+) 1242 WP_013356688.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  C9381_RS05130 (C9381_05120) - 1099671..1100672 (-) 1002 WP_095706235.1 zinc-binding alcohol dehydrogenase family protein -
  C9381_RS05135 (C9381_05125) - 1100859..1101755 (+) 897 WP_107319322.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49323.93 Da        Isoelectric Point: 7.4220

>NTDB_id=284298 C9381_RS05120 WP_003854897.1 1096930..1098312(+) (radA) [Pantoea vagans strain PV989]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEVTSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=284298 C9381_RS05120 WP_003854897.1 1096930..1098312(+) (radA) [Pantoea vagans strain PV989]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAATGAATGCGGCGCAGATTACCCACGCTGGCAGGGGCAATGCAGCGC
CTGCCACGCCTGGAACACCATCACCGAGGTGCGCATCGCCGCCTCGCCCGCCGCTGCGCGTAACGAGCGCCTGAGTGGTT
ATGCCGGCAGCGCGGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGCGTGCTGGGCGGCGGCGTCGTACCGGGCAGCGCTATTCTGATTGGCGGCAGTCCGGGCGCGGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGATTGTCAGAAGGGATGAAAACCCTGTACGTCACCGGTGAAGAGTCAC
TGCAACAGGTAGCGATGCGCGCCCATCGTCTGGGATTACCTACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAGCAGGAGCAGCCGCAACTGATGGTAATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCATCGCCTGGCAGCGTGGCTCAGGTGCGGGAAACCGCTGCTTACCTGACGCGCTTCGCCAAAACGCGCGGCGTGG
CGATCATCATGGTCGGCCACGTCACCAAAGATGGCTCGCTGGCCGGGCCGAAGGTGCTGGAGCACTGCATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGACTCCCGCTTTCGCACGCTGCGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAATCCATCCGCTATCTTCCTGTCGCGTGGCGAAGAGG
TCACCTCGGGCAGTTCGGTCATGGTGCTGTGGGAGGGAACGCGTCCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCAATGATGGGCAATCCGCGCCGCGTGGCGGTGGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCCGTTTTACACCG
CCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCGG
ATCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCACTGCCACAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCCGGTGAGATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCTCTGAAGCAGCGAAGCATGGCTTCAAACGCGC
CATTGTACCGGCGGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I5CYX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424

Multiple sequence alignment