Detailed information    

insolico Bioinformatically predicted

Overview


Name   chiS   Type   Regulator
Locus tag   C7Y67_RS03060 Genome accession   NZ_CP028342
Coordinates   607643..611029 (-) Length   1128 a.a.
NCBI ID   WP_005461251.1    Uniprot ID   Q87LY0
Organism   Vibrio parahaemolyticus isolate R13     
Function   chitin sensor (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 546416..610439 607643..611029 flank -2796


Gene organization within MGE regions


Location: 546416..611029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS02820 (C7Y67_02820) panB 546484..547278 (-) 795 WP_005454450.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  C7Y67_RS02825 (C7Y67_02825) folK 547303..547788 (-) 486 WP_005494002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  C7Y67_RS02830 (C7Y67_02830) pcnB 547785..549152 (-) 1368 WP_015297242.1 polynucleotide adenylyltransferase PcnB -
  C7Y67_RS02840 (C7Y67_02840) gluQRS 549234..550118 (-) 885 WP_005494009.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  C7Y67_RS02850 (C7Y67_02850) dksA 550311..550757 (-) 447 WP_005490361.1 RNA polymerase-binding protein DksA -
  C7Y67_RS02855 (C7Y67_02855) sfsA 550894..551610 (-) 717 WP_025818584.1 DNA/RNA nuclease SfsA -
  C7Y67_RS02860 (C7Y67_02860) - 551644..552054 (+) 411 Protein_453 DEAD/DEAH box helicase -
  C7Y67_RS02865 (C7Y67_02865) - 552824..555067 (+) 2244 WP_108744762.1 tetratricopeptide repeat protein -
  C7Y67_RS02870 (C7Y67_02870) - 555527..558178 (+) 2652 WP_254059192.1 DUF2235 domain-containing protein -
  C7Y67_RS02875 (C7Y67_02875) - 558168..558821 (+) 654 WP_108744764.1 hypothetical protein -
  C7Y67_RS02880 (C7Y67_02880) - 558987..559349 (-) 363 WP_108744765.1 transcriptional regulator -
  C7Y67_RS02890 (C7Y67_02890) - 559549..559758 (-) 210 WP_108744766.1 hypothetical protein -
  C7Y67_RS02895 (C7Y67_02895) - 559819..561126 (-) 1308 WP_254059193.1 HipA domain-containing protein -
  C7Y67_RS02900 (C7Y67_02900) - 561128..561673 (-) 546 WP_108745158.1 hypothetical protein -
  C7Y67_RS02905 (C7Y67_02905) - 561773..561982 (+) 210 WP_108744768.1 helix-turn-helix transcriptional regulator -
  C7Y67_RS27020 - 562597..564639 (-) 2043 WP_254059194.1 hypothetical protein -
  C7Y67_RS02915 (C7Y67_02915) - 564822..566096 (+) 1275 WP_108744769.1 phospholipase D-like domain-containing protein -
  C7Y67_RS02920 (C7Y67_02920) - 566204..566554 (+) 351 WP_108744770.1 hypothetical protein -
  C7Y67_RS02925 (C7Y67_02925) - 566572..567123 (+) 552 WP_029834983.1 hypothetical protein -
  C7Y67_RS02930 (C7Y67_02930) - 567110..567346 (+) 237 WP_108744771.1 ABC-three component system middle component 6 -
  C7Y67_RS02935 (C7Y67_02935) - 567333..569024 (+) 1692 WP_108744772.1 DUF2326 domain-containing protein -
  C7Y67_RS02940 (C7Y67_02940) - 569648..571084 (-) 1437 WP_108744773.1 tyrosine-type recombinase/integrase -
  C7Y67_RS02945 (C7Y67_02945) - 571071..571676 (-) 606 WP_108744774.1 hypothetical protein -
  C7Y67_RS02950 (C7Y67_02950) - 571680..573806 (-) 2127 WP_108744775.1 integrase -
  C7Y67_RS02955 (C7Y67_02955) - 573790..576060 (-) 2271 WP_108744776.1 hypothetical protein -
  C7Y67_RS02960 (C7Y67_02960) hrpB 576152..578242 (+) 2091 Protein_472 ATP-dependent helicase HrpB -
  C7Y67_RS02965 (C7Y67_02965) mrcB 578235..580607 (+) 2373 WP_025500566.1 penicillin-binding protein 1B -
  C7Y67_RS02970 (C7Y67_02970) - 580695..583010 (+) 2316 WP_025546490.1 patatin-like phospholipase family protein -
  C7Y67_RS02975 (C7Y67_02975) acnB 583279..585876 (+) 2598 WP_108744777.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase -
  C7Y67_RS02980 (C7Y67_02980) - 585975..586343 (+) 369 WP_020835406.1 YacL family protein -
  C7Y67_RS02985 (C7Y67_02985) - 586532..586870 (+) 339 WP_005386570.1 P-II family nitrogen regulator -
  C7Y67_RS02990 (C7Y67_02990) - 586897..588126 (+) 1230 WP_005490371.1 ammonium transporter -
  C7Y67_RS02995 (C7Y67_02995) - 588278..589291 (+) 1014 WP_005479089.1 Fe(3+) ABC transporter substrate-binding protein -
  C7Y67_RS03000 (C7Y67_03000) - 589391..591016 (+) 1626 WP_024699414.1 iron ABC transporter permease -
  C7Y67_RS03005 (C7Y67_03005) - 591016..592047 (+) 1032 WP_108744778.1 ABC transporter ATP-binding protein -
  C7Y67_RS03010 (C7Y67_03010) - 592202..593614 (-) 1413 WP_057619572.1 phosphoglucomutase/phosphomannomutase family protein -
  C7Y67_RS03015 (C7Y67_03015) - 593721..596129 (-) 2409 WP_005494031.1 N,N'-diacetylchitobiose phosphorylase -
  C7Y67_RS03020 (C7Y67_03020) - 596214..598133 (-) 1920 WP_025546700.1 family 20 glycosylhydrolase -
  C7Y67_RS03025 (C7Y67_03025) - 598142..599032 (-) 891 WP_015297234.1 N-acetylglucosamine kinase -
  C7Y67_RS03030 (C7Y67_03030) - 599035..600774 (-) 1740 WP_025546699.1 glycoside hydrolase family 9 protein -
  C7Y67_RS03035 (C7Y67_03035) - 600838..601833 (-) 996 WP_005461254.1 ABC transporter ATP-binding protein -
  C7Y67_RS03040 (C7Y67_03040) - 601881..602864 (-) 984 WP_005461267.1 ABC transporter ATP-binding protein -
  C7Y67_RS03045 (C7Y67_03045) - 602867..603892 (-) 1026 WP_005461261.1 ABC transporter permease -
  C7Y67_RS03050 (C7Y67_03050) - 603895..604881 (-) 987 WP_005461259.1 ABC transporter permease -
  C7Y67_RS03055 (C7Y67_03055) - 605052..606734 (-) 1683 WP_005461274.1 ABC transporter substrate-binding protein -
  C7Y67_RS03060 (C7Y67_03060) chiS 607643..611029 (-) 3387 WP_005461251.1 response regulator Regulator

Sequence


Protein


Download         Length: 1128 a.a.        Molecular weight: 127348.05 Da        Isoelectric Point: 5.4383

>NTDB_id=284258 C7Y67_RS03060 WP_005461251.1 607643..611029(-) (chiS) [Vibrio parahaemolyticus isolate R13]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLADDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=284258 C7Y67_RS03060 WP_005461251.1 607643..611029(-) (chiS) [Vibrio parahaemolyticus isolate R13]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGACTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAAAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATCGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCGTATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTAACCTATTCCATTAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTATAAAGACTCGGCATTAGGTAAAACCTTTAAACGTCTAGCTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAGCAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAAAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGCATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAACTCTTCGTTATCGCCATGCTAATCGCGATCATTCTTGTAGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAACTGACTTGGGCAGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACGACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATTAAACAGCAAAACGAAGAACTTGAAAGCAACATCAAGCTGATTCAAAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAATTGCGTACACCGCTACATGGCATGGTTGGG
ATAGCAGAAACCCTTGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAAAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATACAAAAAT
CGGCAGTAAGCTTAGCTAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCAGCCGACCTTAAAGCCGTTTCGGCCGATCCTCAACGCCTCGAACAAGTGCTGTATAATTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTCGACGATCACGTCCGCGTGCAAGTGG
TCGATACTGGTCAGGGGATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGTCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGACTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCACTTTACGTGAG
CAGTCAGCCGATGGTCGGCACCACGTTTAGTTTCACACTGCCATTGGCTAGCGAAGAGGAAATCCAAGCAACTCAAACCT
TAGTGGCGCGCGGGCACTTTCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCAGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTGCGCCTAGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCACTGGTAGAACAAGAAAAGCCAGAGCTGCTGTTACTCGACATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACTTATGATCATGCTGAGCTACCTATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGTGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAGCTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGAGCTGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTAGAACAGCTAGAA
TCTGCACCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCCAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCGTCAGCTGACGAACTAATCGCACCAAAATACTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATTGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCC
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGAGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTAGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGCGGAGAGTTTACTCGTT
TGGCTGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTGGACTATTGGGAGTCTGTTACGGGTGAAAGTAAGTTTGCGTTTGCCGAACAAAGTGGGCTGTGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACCCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCGCGCTGGAGAACGG
TTCTGAGTTCAATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAAGCACAGCGCGAC
AAATTGCAAAGACTGCTCACTAGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q87LY0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.882

100

0.77


Multiple sequence alignment