Detailed information NTG0284250

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C7Y67_RS02465
• Genome accession: NZ_CP028342
• Coordinates: 476972..477961 (+)
• Length: 329 a.a.
• NCBI ID: WP_162597300.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus isolate R13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 471972..482961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C7Y67_RS02430 (C7Y67_02430)	ftsB	471980..472261 (+)	282	WP_005455577.1	cell division protein FtsB	-
C7Y67_RS02435 (C7Y67_02435)	ispD	472263..472967 (+)	705	WP_025546668.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C7Y67_RS02440 (C7Y67_02440)	ispF	472985..473461 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C7Y67_RS02445 (C7Y67_02445)	truD	473508..474551 (+)	1044	WP_024702352.1	tRNA pseudouridine(13) synthase TruD	-
C7Y67_RS02450 (C7Y67_02450)	surE	474551..475327 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
C7Y67_RS02455 (C7Y67_02455)	-	475327..475953 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C7Y67_RS02460 (C7Y67_02460)	-	475968..476891 (+)	924	WP_025546666.1	peptidoglycan DD-metalloendopeptidase family protein	-
C7Y67_RS02465 (C7Y67_02465)	rpoS	476972..477961 (+)	990	WP_162597300.1	RNA polymerase sigma factor RpoS	Regulator
C7Y67_RS02470 (C7Y67_02470)	mutS	478040..480601 (-)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
C7Y67_RS02475 (C7Y67_02475)	pncC	480686..481168 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
C7Y67_RS02480 (C7Y67_02480)	recA	481369..481986 (+)	618	Protein_392	recombinase RecA	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37614.52 Da
• Isoelectric Point: 4.6096

>NTDB_id=284250 C7Y67_RS02465 WP_162597300.1 476972..477961(+) (rpoS) [Vibrio parahaemolyticus isolate R13]
MSISNTVSKVEEFEYDNVLETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=284250 C7Y67_RS02465 WP_162597300.1 476972..477961(+) (rpoS) [Vibrio parahaemolyticus isolate R13]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGTGTTAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCGCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.431	100	0.857