Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CLIM_RS00925 Genome accession   NC_010803
Coordinates   193979..194353 (+) Length   124 a.a.
NCBI ID   WP_012465156.1    Uniprot ID   -
Organism   Chlorobium limicola DSM 245     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 188979..199353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLIM_RS12845 (Clim_0171) rpmF 189735..189926 (-) 192 WP_012465151.1 50S ribosomal protein L32 -
  CLIM_RS00895 (Clim_0172) - 189952..190479 (-) 528 WP_012465152.1 DUF177 domain-containing protein -
  CLIM_RS00910 (Clim_0173) - 191009..191668 (+) 660 WP_012465153.1 uridine kinase -
  CLIM_RS00915 (Clim_0174) - 191750..193246 (+) 1497 WP_012465154.1 PAS domain S-box protein -
  CLIM_RS00920 (Clim_0175) - 193271..193966 (+) 696 WP_012465155.1 cell wall metabolism sensor histidine kinase WalK -
  CLIM_RS00925 (Clim_0176) pilG 193979..194353 (+) 375 WP_012465156.1 response regulator Regulator
  CLIM_RS00930 (Clim_0177) rd 194424..194600 (-) 177 WP_012465157.1 rubredoxin -
  CLIM_RS00940 (Clim_0178) ribB 195058..195726 (+) 669 WP_012465158.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
  CLIM_RS00945 (Clim_0179) - 195755..197065 (-) 1311 WP_012465159.1 Glu/Leu/Phe/Val dehydrogenase -
  CLIM_RS00950 (Clim_0180) amrB 197234..198091 (-) 858 WP_012465160.1 AmmeMemoRadiSam system protein B -
  CLIM_RS00955 (Clim_0181) dapF 198250..199068 (-) 819 WP_012465161.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13854.09 Da        Isoelectric Point: 6.2351

>NTDB_id=28425 CLIM_RS00925 WP_012465156.1 193979..194353(+) (pilG) [Chlorobium limicola DSM 245]
MKPHTILVVDDSPNIRRLLAHNLGRKFTVLTAGDAAEALDILTRSEKTDLLVVDIAMPGMDGFSLTALIKSNPEYRNIPL
VMLTAKDCSEDREKGLKLGAADYMTKPFNLEEFSEKIETLLKRH

Nucleotide


Download         Length: 375 bp        

>NTDB_id=28425 CLIM_RS00925 WP_012465156.1 193979..194353(+) (pilG) [Chlorobium limicola DSM 245]
ATGAAACCGCATACCATACTTGTCGTCGATGATTCCCCAAACATCAGGCGCCTTCTTGCCCATAACCTCGGAAGAAAGTT
TACCGTTCTTACTGCCGGAGATGCGGCTGAAGCGCTCGATATCCTGACTCGGAGCGAAAAAACGGATCTGCTGGTTGTCG
ATATCGCAATGCCCGGCATGGACGGGTTCTCGCTTACAGCTCTCATCAAGAGCAATCCAGAGTATCGGAACATTCCTCTT
GTCATGCTTACGGCGAAGGACTGCAGTGAAGACCGTGAAAAAGGGCTGAAGCTCGGAGCTGCCGATTACATGACAAAACC
CTTCAATCTTGAGGAGTTTTCAGAAAAAATCGAGACCCTGCTCAAACGACACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

42.202

87.903

0.371

Multiple sequence alignment