Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C8077_RS00545 Genome accession   NZ_CP028341
Coordinates   137112..138953 (+) Length   613 a.a.
NCBI ID   WP_055054905.1    Uniprot ID   A0A174CGN8
Organism   Bifidobacterium adolescentis strain 1-11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 132112..143953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8077_RS00520 (C8077_00520) thiF 132130..132843 (-) 714 WP_107645954.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  C8077_RS00525 (C8077_00525) thiS 132896..133090 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  C8077_RS00530 (C8077_00530) - 133526..134548 (+) 1023 WP_195525311.1 aldo/keto reductase -
  C8077_RS00535 (C8077_00535) - 134732..135223 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  C8077_RS00540 (C8077_00540) rcrP 135350..137101 (+) 1752 WP_085347218.1 ABC transporter ATP-binding protein Regulator
  C8077_RS00545 (C8077_00545) rcrQ 137112..138953 (+) 1842 WP_055054905.1 ABC transporter ATP-binding protein Regulator
  C8077_RS00550 (C8077_00550) - 139124..140104 (+) 981 WP_011742640.1 aldo/keto reductase -
  C8077_RS00555 (C8077_00555) - 140189..141241 (-) 1053 WP_041777206.1 FAD:protein FMN transferase -
  C8077_RS00560 (C8077_00560) - 141768..143453 (+) 1686 WP_229080994.1 FTR1 family iron permease -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67407.14 Da        Isoelectric Point: 6.5885

>NTDB_id=284234 C8077_RS00545 WP_055054905.1 137112..138953(+) (rcrQ) [Bifidobacterium adolescentis strain 1-11]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMIFALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSVTLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYTGHTVVK
AYCGEERSIEQFEKYNNDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGADGKPQPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=284234 C8077_RS00545 WP_055054905.1 137112..138953(+) (rcrQ) [Bifidobacterium adolescentis strain 1-11]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTTTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGATATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACGGCACAGCAGCTGCGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTCATCACATCGGTCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACACCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAACGACCTGTACGTGTCCGGCTGGAAGAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCGCGG
TGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGAGCC
GGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTGGGCGTCGGCGCGGACGGCAAGCCGCAGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCTATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATTGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGTTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGCCAGCTGCTGACGATCGCCCGCGCGATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCCACCTCCTCGGTCGATACACGCACCGAGGAGCTGATCCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(36-320)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A174CGN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.315

96.411

0.524

Multiple sequence alignment