Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   EGV94_RS09775 Genome accession   NZ_CP033685
Coordinates   2036358..2036687 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain H26023     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031358..2041687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGV94_RS09760 (EGV94_09725) - 2031756..2032709 (+) 954 WP_003138480.1 SDR family oxidoreductase -
  EGV94_RS09765 (EGV94_09730) - 2032709..2033725 (+) 1017 WP_003138482.1 glycosyltransferase family 4 protein -
  EGV94_RS09770 (EGV94_09735) - 2034170..2036167 (+) 1998 WP_003138484.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  EGV94_RS09775 (EGV94_09740) comEA/comE1 2036358..2036687 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  EGV94_RS09785 (EGV94_09750) - 2036904..2038100 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  EGV94_RS09790 (EGV94_09755) uvrB 2038288..2040300 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=284216 EGV94_RS09775 WP_003138486.1 2036358..2036687(+) (comEA/comE1) [Pseudomonas aeruginosa strain H26023]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=284216 EGV94_RS09775 WP_003138486.1 2036358..2036687(+) (comEA/comE1) [Pseudomonas aeruginosa strain H26023]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment