Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C7M36_RS11620 Genome accession   NZ_CP028334
Coordinates   2444706..2446517 (+) Length   603 a.a.
NCBI ID   WP_160248387.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain SRCM101167     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439706..2451517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M36_RS11595 (C7M36_02367) - 2440422..2440922 (-) 501 WP_003640886.1 antibiotic biosynthesis monooxygenase -
  C7M36_RS11600 (C7M36_02368) - 2441063..2441806 (+) 744 WP_003644623.1 MBL fold metallo-hydrolase -
  C7M36_RS11605 (C7M36_02369) spxA 2442093..2442491 (+) 399 WP_011101690.1 transcriptional regulator SpxA -
  C7M36_RS11610 (C7M36_02370) - 2442627..2443358 (+) 732 WP_003640883.1 adaptor protein MecA -
  C7M36_RS11615 (C7M36_02371) - 2443543..2444628 (+) 1086 WP_015380550.1 competence protein CoiA -
  C7M36_RS11620 (C7M36_02372) pepF 2444706..2446517 (+) 1812 WP_160248387.1 oligoendopeptidase F Regulator
  C7M36_RS11625 (C7M36_02373) - 2446732..2447367 (-) 636 WP_003640880.1 DsbA family protein -
  C7M36_RS11630 (C7M36_02374) - 2447660..2448322 (+) 663 WP_003640879.1 GTP pyrophosphokinase family protein -
  C7M36_RS11635 (C7M36_02375) - 2448319..2449122 (+) 804 WP_003640878.1 NAD kinase -
  C7M36_RS11640 (C7M36_02376) - 2449119..2450021 (+) 903 WP_015380548.1 RluA family pseudouridine synthase -
  C7M36_RS11645 (C7M36_02377) - 2450275..2450913 (-) 639 WP_003645947.1 copper homeostasis protein CutC -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67761.87 Da        Isoelectric Point: 4.9372

>NTDB_id=284206 C7M36_RS11620 WP_160248387.1 2444706..2446517(+) (pepF) [Lactiplantibacillus plantarum strain SRCM101167]
MVVTKQLPTRSAVPEELTWDLTPIYADQAAYEADIAQVKAAIPTVTALKETFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILELKPGQLDTYLDENVDLRDYRHLLDTIRLQKGHVLSESEEA
LLAGASDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTAVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYS
YQQAQATALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTQQTDAVADYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFEVFEERLNEFEQLVTQD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=284206 C7M36_RS11620 WP_160248387.1 2444706..2446517(+) (pepF) [Lactiplantibacillus plantarum strain SRCM101167]
ATGGTAGTAACCAAACAATTGCCGACCCGTTCGGCCGTTCCTGAAGAACTGACGTGGGATTTGACGCCCATTTATGCAGA
TCAGGCCGCGTATGAGGCGGATATTGCACAAGTCAAAGCTGCAATCCCCACCGTCACTGCGCTTAAAGAAACGTTTACAA
GCTCGGCCGACACGGTGCTGGCTGGCATCCAGGCTGTTTTAGCGCTGTATCGTCGGTTAGAGAAAGTGGCGGTATACGCA
AGTCTGAAAAGTGACCAGGATACTGGCAATAGTACCAATGCGGCTTTAGACGATCAAGCTAGTAGTTTGACTGCCAAGGT
ATCCGCAGCGACTGCCTGGTTCGAACCAGCAATCTTGGAATTAAAGCCGGGCCAATTGGATACGTACCTTGATGAAAACG
TCGATTTACGTGATTATCGGCATTTGTTGGATACGATCCGGTTGCAAAAGGGACACGTTCTGTCTGAAAGCGAAGAAGCT
TTACTCGCAGGCGCTAGTGATATTTTTGGTGCTTCTGCGAAAACTTTTGGTGTACTGAATAACGCTGACTTTCAATTTCC
AACGGTAAAGGATGACGACGGCAACCCTGTCAAATTGTCACAAGGAATTTATGGGGTGTTACTTGAGTCCGTTCATCCGG
CTGTTCGGCGAGAGGCGTTTGAAGCACTGTATAAAGTATACGGCCAGTTCCGGCGAACACTTGCTTCGACTTTAGCTAGC
CAAGTCAAGGTACACAATTTTGTTGCCCAGGCTCATCATTATCCAGATGCGCGGACGGCAGCACTTGCTGCCAATCAGAT
TCCGACGGCGGTTTACGATTCTTTAGTCACGTCCGTTGACAAGCATTTGGACTTATTGCACCGGTATGTTGCGTTACGGA
AACAACTGCTCGGAGTTGATCAGTTGCATATGTATGATATGTACACGCCATTGGCACCCAAGCCGACGACCAACTATTCC
TACCAGCAGGCTCAAGCAACTGCTTTACAAGCGCTCAAAATTTTGGGTCCTGATTATCTCAAACACGTCAAAACAGCGTT
TGCTTCACGGTGGATTGATGTGGTGGAAAATCAAGGCAAACGTAGCGGGGCGTATTCGTCAGGAATGTATGATACCGCGC
CATACATGCTGTTGAACTGGCAGGATAATATTGATAATTTATATACGTTGGTGCACGAAATGGGACACAGTATGCACTCT
TACTTCACGACACATCATCAGCCTTATCAGTATGGTGACTATTCAATTTTCGTGGCGGAAATTGCATCAACGACTAATGA
AAACTTGTTGACGAACTATTTCTTAGCGACTGAACAAGATCCAAAAATGCGGGCGTATGTCTTGAATTACTACTTAGATG
GATTTAAAGGCACCGTTTTCCGGCAGACGCAATTTGCTGAGTTTGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCTTTGACTGCCGATCGCTTGTCAAAACATTATTTGCAGTTGAACCAACGCTACTATGGTGACGCCGTCGTCAGTGATCC
GCAAATTGCCGACGAATGGTCCCGTATCCCGCATTTTTATTACAATTATTATGTTTATCAGTATGCCACGGGTTTTGCAG
CGGCCTCAACGTTGGCTGACCGTATTAGTACGCAACAGACAGATGCTGTTGCGGATTATCTCGGTTACTTGAAAGCTGGT
TCATCTGCTTTCCCAATCGATGTCATGCACCGAGCTGGAGTTGATATGACCAAGCCTGATTATCTTGATGCAGCTTTCGA
GGTATTTGAAGAACGATTAAATGAATTTGAACAGTTGGTCACCCAAGATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.507

0.507

Multiple sequence alignment