Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   EGV95_RS31295 Genome accession   NZ_CP033684
Coordinates   6483741..6484265 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain H26027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6478741..6489265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGV95_RS31280 (EGV95_31180) aroB 6479857..6480963 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  EGV95_RS31285 (EGV95_31185) aroK 6481013..6481531 (-) 519 WP_003095833.1 shikimate kinase AroK -
  EGV95_RS31290 (EGV95_31190) pilQ 6481543..6483687 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  EGV95_RS31295 (EGV95_31195) comL/pilP 6483741..6484265 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EGV95_RS31300 (EGV95_31200) pilO 6484262..6484885 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGV95_RS31305 (EGV95_31205) pilN 6484882..6485478 (-) 597 WP_124014412.1 type 4a pilus biogenesis protein PilN Machinery gene
  EGV95_RS31310 (EGV95_31210) pilM 6485478..6486542 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  EGV95_RS31315 (EGV95_31215) - 6486727..6489198 (+) 2472 WP_016562439.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=284172 EGV95_RS31295 WP_003095836.1 6483741..6484265(-) (comL/pilP) [Pseudomonas aeruginosa strain H26027]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=284172 EGV95_RS31295 WP_003095836.1 6483741..6484265(-) (comL/pilP) [Pseudomonas aeruginosa strain H26027]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362