Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGV95_RS30895 Genome accession   NZ_CP033684
Coordinates   6397294..6397800 (+) Length   168 a.a.
NCBI ID   WP_047337393.1    Uniprot ID   A0A7U7I7F2
Organism   Pseudomonas aeruginosa strain H26027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6392294..6402800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGV95_RS30880 (EGV95_30785) - 6392323..6393606 (+) 1284 WP_058142533.1 hypothetical protein -
  EGV95_RS30885 (EGV95_30790) - 6393614..6394324 (+) 711 WP_047337391.1 hypothetical protein -
  EGV95_RS30890 (EGV95_30795) - 6394287..6396935 (-) 2649 WP_047337392.1 AAA family ATPase -
  EGV95_RS30895 (EGV95_30800) radC 6397294..6397800 (+) 507 WP_047337393.1 DNA repair protein RadC Machinery gene
  EGV95_RS30900 (EGV95_30805) - 6397871..6398836 (-) 966 WP_239509154.1 hypothetical protein -
  EGV95_RS30905 (EGV95_30810) - 6399273..6400103 (+) 831 WP_047337395.1 DUF932 domain-containing protein -
  EGV95_RS30910 (EGV95_30815) - 6400183..6402228 (+) 2046 WP_047337396.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18787.32 Da        Isoelectric Point: 6.7634

>NTDB_id=284170 EGV95_RS30895 WP_047337393.1 6397294..6397800(+) (radC) [Pseudomonas aeruginosa strain H26027]
MSQFSLSSDASLLVRDGRGRYRPASADQILDAARRVIDQKMQRGTEFSSPATVKEYLRTKLAGFEHEVFAILFLDTRHRL
IEYVEMFRGTIDQASVYPREVVKEALQHNAAAVILAHNHPSGNPEPSAADRALTQRLKEALTLVEVRTLDHIIVAGDQTT
AFAELGWL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=284170 EGV95_RS30895 WP_047337393.1 6397294..6397800(+) (radC) [Pseudomonas aeruginosa strain H26027]
ATGTCGCAGTTTTCCCTCTCTTCCGATGCCTCGCTGCTGGTGCGTGACGGCCGTGGCCGCTATCGGCCGGCGTCGGCCGA
CCAGATCCTGGATGCCGCGCGTCGGGTCATCGACCAGAAGATGCAGCGCGGTACCGAGTTTAGTTCGCCGGCGACGGTCA
AGGAGTACCTGCGCACCAAGCTCGCAGGCTTCGAGCACGAGGTCTTCGCAATCCTGTTCCTCGACACGCGCCATCGGCTG
ATCGAGTACGTCGAGATGTTCCGCGGCACCATAGACCAGGCATCGGTGTATCCGCGCGAGGTGGTCAAGGAAGCGCTGCA
GCACAATGCGGCGGCGGTGATCTTGGCGCACAACCACCCGAGCGGGAATCCCGAGCCGAGCGCGGCCGATCGGGCACTGA
CCCAGCGGCTCAAGGAGGCGCTGACACTGGTTGAGGTGCGCACGCTGGATCACATCATCGTTGCAGGCGACCAGACGACG
GCATTCGCCGAACTCGGCTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7I7F2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.946

88.095

0.405