Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C9I28_RS11985 Genome accession   NZ_CP028324
Coordinates   2741357..2742733 (+) Length   458 a.a.
NCBI ID   WP_107141695.1    Uniprot ID   A0A2R4CA04
Organism   Pseudoduganella armeniaca strain ZMN-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2736357..2747733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I28_RS11960 (C9I28_11955) rimI 2736362..2736838 (+) 477 WP_107141690.1 ribosomal protein S18-alanine N-acetyltransferase -
  C9I28_RS11965 (C9I28_11960) - 2736835..2737809 (+) 975 WP_107141691.1 uracil-DNA glycosylase -
  C9I28_RS11970 (C9I28_11965) - 2737793..2738794 (+) 1002 WP_107141692.1 DUF1853 family protein -
  C9I28_RS11975 (C9I28_11970) lplT 2738795..2740057 (-) 1263 WP_107141693.1 lysophospholipid transporter LplT -
  C9I28_RS11980 (C9I28_11975) alr 2740209..2741309 (+) 1101 WP_107141694.1 alanine racemase -
  C9I28_RS11985 (C9I28_11980) radA 2741357..2742733 (+) 1377 WP_107141695.1 DNA repair protein RadA Machinery gene
  C9I28_RS11990 (C9I28_11985) - 2742800..2743120 (+) 321 WP_107141696.1 PilZ domain-containing protein -
  C9I28_RS11995 (C9I28_11990) fliD 2743230..2744579 (+) 1350 WP_107141697.1 flagellar filament capping protein FliD -
  C9I28_RS12000 (C9I28_11995) - 2745062..2745760 (-) 699 WP_229416031.1 transposase -
  C9I28_RS12005 (C9I28_12000) - 2745797..2746846 (-) 1050 WP_229416032.1 patatin-like phospholipase family protein -
  C9I28_RS12010 (C9I28_12005) sixA 2747267..2747725 (-) 459 WP_107141698.1 phosphohistidine phosphatase SixA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48869.39 Da        Isoelectric Point: 7.7229

>NTDB_id=284114 C9I28_RS11985 WP_107141695.1 2741357..2742733(+) (radA) [Pseudoduganella armeniaca strain ZMN-3]
MAKAKTNYTCSECGGTSTKWTGQCPACRQWNTMVETVVETAGANRFSQGQHQALAQTAPVLSLHEIEALDVPRFGTGIDE
FDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALAEMSRLKSVLYVSGEESGAQIALRAKRLAIDAKDFKLQAEIQLEKIL
GTLADVRPQVAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRVAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDSHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASHL
PNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGFVVFGEVGLA
GEIRPAPRGQERLREAAKLGFAIAMIPKANAPKQPIEGMTIIAVDRIDDAFNRLRELQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=284114 C9I28_RS11985 WP_107141695.1 2741357..2742733(+) (radA) [Pseudoduganella armeniaca strain ZMN-3]
ATGGCAAAAGCAAAGACGAACTACACCTGCAGCGAATGCGGCGGCACCAGCACCAAATGGACGGGGCAGTGCCCGGCGTG
CCGGCAGTGGAACACGATGGTGGAAACCGTCGTCGAGACGGCTGGCGCGAACCGCTTTTCGCAGGGCCAGCACCAGGCGC
TGGCGCAGACGGCGCCGGTGCTGTCGCTGCACGAGATCGAGGCGCTCGACGTGCCGCGCTTCGGCACGGGCATCGATGAA
TTCGACCGCGTGCTGGGCGGCGGGCTGGTGGCCGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGTATCGGCAAGTCCAC
CTTGCTGCTGCAGGCGCTGGCCGAAATGTCGCGCTTGAAAAGCGTGTTGTACGTGTCGGGCGAGGAATCGGGCGCGCAGA
TCGCGCTGCGCGCCAAGCGCCTCGCCATCGACGCCAAGGATTTCAAGCTGCAGGCCGAGATCCAGCTGGAGAAGATCCTC
GGTACCCTGGCGGACGTGCGGCCGCAGGTTGCCGTGATCGACTCGATCCAGACCCTGTATTCGGACGCGCTGACGTCCGC
CCCCGGTTCGGTGGCGCAGGTGCGCGAGTGCGCCGCGCAGCTGACGCGCGTGGCCAAGCAGACCGGCGTGACGATCATCC
TGGTCGGTCACGTGACGAAGGAGGGCGCGCTGGCCGGGCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACAGCCATTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCCGTCAACGAGCTGGGTGTGTT
CGCCATGACGGAAAAGGGCCTGAAGGGCGTGTCGAATCCATCCGCGCTGTTCCTGTCGCAGCACGACAACCAGGTGCCTG
GCTCCTGCGTGATGGTGACGCAGGAAGGCACCCGGCCGCTGCTGGTGGAAATCCAGGCACTGGTCGACGCCAGCCACCTG
CCCAACGCGCGCCGCCTGTCCGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCAGTGCTGCACCGGCACGCCGG
CATCGCCGCGTTCGACCAGGACGTGTTCATCAATGCGGTCGGCGGCGTCAAGATCACGGAGCCGGCGGCCGACCTGGCTG
TGTTGCTGGCGATAAACTCGTCGATGCGCAACAAGCCGCTGCCGCGGGGCTTTGTGGTGTTCGGCGAAGTGGGCCTGGCG
GGCGAGATCCGGCCGGCACCGCGCGGACAGGAGCGGCTGCGCGAGGCGGCCAAGCTGGGCTTCGCCATAGCGATGATTCC
CAAGGCAAACGCGCCAAAGCAGCCGATCGAAGGCATGACGATCATTGCCGTCGACCGCATCGACGATGCGTTCAACCGCT
TGCGCGAATTGCAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4CA04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

100

0.489
  radA Streptococcus mitis SK321

46.608

99.782

0.465
  radA Streptococcus mitis NCTC 12261

46.491

99.563

0.463
  radA Streptococcus pneumoniae TIGR4

47.738

96.507

0.461
  radA Streptococcus pneumoniae D39

47.738

96.507

0.461
  radA Streptococcus pneumoniae Rx1

47.738

96.507

0.461
  radA Streptococcus pneumoniae R6

47.738

96.507

0.461

Multiple sequence alignment