Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS28675 Genome accession   NZ_CP033635
Coordinates   5271391..5272059 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5266391..5277059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS28645 (CQP61_28610) yicC 5266410..5267273 (-) 864 WP_000621328.1 YicC/YloC family endoribonuclease -
  CQP61_RS28650 (CQP61_28615) rph 5267400..5268116 (+) 717 WP_001247093.1 ribonuclease PH -
  CQP61_RS28655 (CQP61_28620) pyrE 5268182..5268823 (+) 642 WP_000781153.1 orotate phosphoribosyltransferase -
  CQP61_RS28660 (CQP61_28625) slmA 5268860..5269456 (-) 597 WP_000818598.1 nucleoid occlusion factor SlmA -
  CQP61_RS28665 (CQP61_28630) dut 5269563..5270021 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CQP61_RS28670 (CQP61_28635) coaBC 5269999..5271219 (-) 1221 WP_000050149.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CQP61_RS28675 (CQP61_28640) radC 5271391..5272059 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CQP61_RS28680 (CQP61_28645) rpmB 5272276..5272512 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CQP61_RS28685 (CQP61_28650) rpmG 5272533..5272700 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CQP61_RS28690 (CQP61_28655) mutM 5272798..5273607 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CQP61_RS28695 (CQP61_28660) coaD 5273646..5274125 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CQP61_RS28700 (CQP61_28665) waaA 5274133..5275410 (-) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CQP61_RS28705 (CQP61_28670) rfaQ 5275823..5276881 (+) 1059 WP_000360395.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=284081 CQP61_RS28675 WP_001297375.1 5271391..5272059(+) (radC) [Escherichia coli isolate ECCNB12-2]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=284081 CQP61_RS28675 WP_001297375.1 5271391..5272059(+) (radC) [Escherichia coli isolate ECCNB12-2]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTTACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment