Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS28170 Genome accession   NZ_CP033635
Coordinates   5164288..5164764 (-) Length   158 a.a.
NCBI ID   WP_072648644.1    Uniprot ID   -
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5159288..5169764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS28130 (CQP61_28105) rhuM 5160735..5160896 (-) 162 Protein_4949 RhuM family protein -
  CQP61_RS28135 (CQP61_28110) - 5161115..5161956 (-) 842 Protein_4950 DUF4942 domain-containing protein -
  CQP61_RS28140 (CQP61_28115) - 5162041..5162238 (-) 198 WP_085975623.1 DUF957 domain-containing protein -
  CQP61_RS28145 (CQP61_28120) - 5162314..5162466 (-) 153 Protein_4952 DUF5983 family protein -
  CQP61_RS28150 (CQP61_28125) - 5162463..5162837 (-) 375 WP_096990822.1 TA system toxin CbtA family protein -
  CQP61_RS28155 (CQP61_28130) - 5162927..5163295 (-) 369 WP_063112944.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CQP61_RS28160 (CQP61_28135) - 5163345..5163989 (-) 645 WP_123891640.1 antitoxin of toxin-antitoxin stability system -
  CQP61_RS28165 (CQP61_28140) - 5164004..5164225 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  CQP61_RS28170 (CQP61_28145) radC 5164288..5164764 (-) 477 WP_072648644.1 RadC family protein Machinery gene
  CQP61_RS28175 (CQP61_28150) - 5164780..5165259 (-) 480 WP_000860074.1 antirestriction protein -
  CQP61_RS28180 (CQP61_28155) - 5165341..5166159 (-) 819 WP_001234688.1 DUF932 domain-containing protein -
  CQP61_RS32570 - 5166239..5166370 (+) 132 WP_001349446.1 hypothetical protein -
  CQP61_RS28185 (CQP61_28160) - 5166345..5167229 (-) 885 WP_000010380.1 YfjP family GTPase -
  CQP61_RS28195 (CQP61_28165) - 5167330..5168553 (+) 1224 WP_032353838.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17748.39 Da        Isoelectric Point: 7.6152

>NTDB_id=284079 CQP61_RS28170 WP_072648644.1 5164288..5164764(-) (radC) [Escherichia coli isolate ECCNB12-2]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=284079 CQP61_RS28170 WP_072648644.1 5164288..5164764(-) (radC) [Escherichia coli isolate ECCNB12-2]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATTACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399