Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS23855 Genome accession   NZ_CP033635
Coordinates   4288034..4288510 (-) Length   158 a.a.
NCBI ID   WP_001186708.1    Uniprot ID   -
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4283034..4293510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS23820 (CQP61_23805) yjgR 4283408..4284910 (+) 1503 WP_001294574.1 helicase HerA-like C-terminal domain-containing protein -
  CQP61_RS23825 (CQP61_23810) - 4285165..4286013 (-) 849 WP_121832071.1 DUF4942 domain-containing protein -
  CQP61_RS23830 (CQP61_23815) - 4286110..4286307 (-) 198 WP_001349630.1 DUF957 domain-containing protein -
  CQP61_RS23835 (CQP61_23820) - 4286327..4286814 (-) 488 Protein_4139 DUF5983 family protein -
  CQP61_RS23840 (CQP61_23825) - 4286811..4287188 (-) 378 WP_097413541.1 TA system toxin CbtA family protein -
  CQP61_RS23845 (CQP61_23830) cbeA 4287278..4287646 (-) 369 WP_089620082.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CQP61_RS23850 (CQP61_23835) - 4287726..4287947 (-) 222 WP_000692287.1 DUF987 domain-containing protein -
  CQP61_RS23855 (CQP61_23840) radC 4288034..4288510 (-) 477 WP_001186708.1 RadC family protein Machinery gene
  CQP61_RS23860 (CQP61_23845) - 4288526..4289005 (-) 480 WP_000860074.1 antirestriction protein -
  CQP61_RS23865 (CQP61_23850) - 4289087..4289908 (-) 822 WP_097413542.1 DUF932 domain-containing protein -
  CQP61_RS23875 (CQP61_23860) - 4290009..4290242 (-) 234 WP_053287870.1 DUF905 family protein -
  CQP61_RS23880 (CQP61_23865) - 4290248..4290925 (-) 678 WP_001601175.1 hypothetical protein -
  CQP61_RS23885 (CQP61_23870) - 4291044..4291928 (-) 885 WP_097413544.1 GTPase -
  CQP61_RS23890 (CQP61_23875) - 4292035..4293009 (+) 975 WP_032354114.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17631.28 Da        Isoelectric Point: 7.6151

>NTDB_id=284058 CQP61_RS23855 WP_001186708.1 4288034..4288510(-) (radC) [Escherichia coli isolate ECCNB12-2]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=284058 CQP61_RS23855 WP_001186708.1 4288034..4288510(-) (radC) [Escherichia coli isolate ECCNB12-2]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTACCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment