Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS21470 Genome accession   NZ_CP033635
Coordinates   3773427..3773906 (-) Length   159 a.a.
NCBI ID   WP_000438147.1    Uniprot ID   -
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3768427..3778906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS21435 (CQP61_21420) ecpE 3769463..3770173 (+) 711 WP_001361803.1 fimbrial chaperone EcpE -
  CQP61_RS21440 (CQP61_21425) ykgJ 3770486..3770815 (+) 330 WP_001303809.1 YkgJ family cysteine cluster protein -
  CQP61_RS21445 (CQP61_21430) yagU 3771064..3771678 (-) 615 WP_001019920.1 YagU family protein -
  CQP61_RS21455 (CQP61_21445) - 3772471..3772839 (-) 369 WP_000854677.1 TA system toxin CbtA family protein -
  CQP61_RS21460 (CQP61_21450) yfjZ 3772860..3773177 (-) 318 WP_000065824.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CQP61_RS21465 (CQP61_21455) ykfH 3773197..3773418 (-) 222 WP_001220307.1 DUF987 domain-containing protein -
  CQP61_RS21470 (CQP61_21460) radC 3773427..3773906 (-) 480 WP_000438147.1 RadC family protein Machinery gene
  CQP61_RS21475 (CQP61_21465) - 3773918..3774376 (-) 459 WP_000211834.1 antirestriction protein -
  CQP61_RS21480 (CQP61_21470) - 3774462..3774698 (-) 237 Protein_3683 DUF905 domain-containing protein -
  CQP61_RS32320 - 3776182..3776333 (-) 152 Protein_3685 IS3 family transposase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17608.36 Da        Isoelectric Point: 8.6570

>NTDB_id=284052 CQP61_RS21470 WP_000438147.1 3773427..3773906(-) (radC) [Escherichia coli isolate ECCNB12-2]
MEQSLIPLAPALPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMVLYLNQQNQLIAHETLFAG
SISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTSPSKADKTITQRLVQALQLVDIRVPDHLIVGGTQILSFAEHGLL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=284052 CQP61_RS21470 WP_000438147.1 3773427..3773906(-) (radC) [Escherichia coli isolate ECCNB12-2]
ATGGAACAGTCACTTATCCCACTGGCTCCGGCATTACCACTAACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCT
TGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCCCGCGACTGGCTGAAACTGAAAATGGCGG
GACTGGAGCGCGAAGAGTTTATGGTGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGT
TCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTACTTCAATGCGGCAGCAGTGATACTGGC
GCATAACCATCCCTCCGGAGACACCTCGCCCAGCAAGGCAGATAAGACCATCACGCAGCGTCTGGTGCAGGCGCTTCAGC
TCGTTGATATCCGTGTGCCTGACCACCTTATCGTCGGTGGTACGCAGATATTGTCGTTCGCTGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.409

0.377