Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CQP61_RS20490 Genome accession   NZ_CP033635
Coordinates   3568278..3568883 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate ECCNB12-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3563278..3573883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS20470 (CQP61_20450) aes 3563419..3564378 (+) 960 WP_000801813.1 acetyl esterase -
  CQP61_RS20475 (CQP61_20455) hemH 3564375..3565337 (-) 963 WP_001250112.1 ferrochelatase -
  CQP61_RS20480 (CQP61_20460) adk 3565469..3566113 (-) 645 WP_001220233.1 adenylate kinase -
  CQP61_RS20485 (CQP61_20465) htpG 3566294..3568168 (-) 1875 WP_121831981.1 molecular chaperone HtpG -
  CQP61_RS20490 (CQP61_20470) recR 3568278..3568883 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CQP61_RS20495 (CQP61_20475) ybaB 3568883..3569212 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CQP61_RS20500 (CQP61_20480) dnaX 3569265..3571196 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  CQP61_RS20505 (CQP61_20485) apt 3571325..3571876 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CQP61_RS20510 (CQP61_20490) ybaN 3572029..3572406 (-) 378 WP_001188905.1 DUF454 family protein -
  CQP61_RS20515 (CQP61_20495) priC 3572476..3573003 (+) 528 WP_000844860.1 primosomal replication protein N'' -
  CQP61_RS20520 (CQP61_20500) rsmS 3573017..3573178 (+) 162 WP_000051142.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=284047 CQP61_RS20490 WP_001195025.1 3568278..3568883(-) (recR) [Escherichia coli isolate ECCNB12-2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=284047 CQP61_RS20490 WP_001195025.1 3568278..3568883(-) (recR) [Escherichia coli isolate ECCNB12-2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443