Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS18905 Genome accession   NZ_CP033635
Coordinates   3248512..3248988 (+) Length   158 a.a.
NCBI ID   WP_072721126.1    Uniprot ID   -
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3243512..3253988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS18875 (CQP61_18855) - 3244723..3245946 (-) 1224 WP_072721956.1 hypothetical protein -
  CQP61_RS18885 (CQP61_18865) - 3246047..3246931 (+) 885 WP_106509117.1 YfjP family GTPase -
  CQP61_RS18895 (CQP61_18875) - 3247117..3247935 (+) 819 WP_121832183.1 DUF932 domain-containing protein -
  CQP61_RS18900 (CQP61_18880) - 3248017..3248457 (+) 441 WP_123891635.1 antirestriction protein -
  CQP61_RS18905 (CQP61_18885) radC 3248512..3248988 (+) 477 WP_072721126.1 RadC family protein Machinery gene
  CQP61_RS18910 (CQP61_18890) - 3249078..3249299 (+) 222 WP_000706990.1 DUF987 domain-containing protein -
  CQP61_RS18915 (CQP61_18895) - 3249316..3249960 (+) 645 WP_000094922.1 hypothetical protein -
  CQP61_RS18920 (CQP61_18900) - 3250011..3250388 (+) 378 WP_001285648.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CQP61_RS18925 (CQP61_18905) - 3250435..3250809 (+) 375 WP_000847115.1 TA system toxin CbtA family protein -
  CQP61_RS18930 (CQP61_18910) - 3250806..3251297 (+) 492 WP_122987109.1 DUF5983 family protein -
  CQP61_RS18935 (CQP61_18915) - 3251317..3251514 (+) 198 WP_001354260.1 DUF957 domain-containing protein -
  CQP61_RS18940 (CQP61_18920) - 3251610..3252458 (+) 849 WP_001280451.1 DUF4942 domain-containing protein -
  CQP61_RS18945 (CQP61_18925) glnP 3252766..3253425 (+) 660 WP_001159065.1 glutamine ABC transporter permease GlnP -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17746.42 Da        Isoelectric Point: 8.7154

>NTDB_id=284043 CQP61_RS18905 WP_072721126.1 3248512..3248988(+) (radC) [Escherichia coli isolate ECCNB12-2]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVVKRALYHNAAAVVLAHNHPSGEVTPGKADRLITERLVQALALVDIRVPDHLIIGGSRVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=284043 CQP61_RS18905 WP_072721126.1 3248512..3248988(+) (radC) [Escherichia coli isolate ECCNB12-2]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTACCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGGTTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCATCCGTCCGGTGAAGTCACACCCGGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCGGGTGTTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.097

71.519

0.38

Multiple sequence alignment